Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120224.Seq
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    30   1.4  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    30   1.4  
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ...    28   5.7  

>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
 Frame = +2

Query: 44  RTSEFERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDS-----RHRHPVAADS 208
           R S  +RH   K++    S  E      HR R+  ++     +DS      HRH  +  S
Sbjct: 666 RYSSKDRHSRDKHKHESSSDDEYHSRSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKHS 725

Query: 209 GPVHRKRVHRTHHL*NRK-RKNDDLEDE 289
             V   +  R+HH  +RK  K+ D  D+
Sbjct: 726 KDVDYSKDKRSHHHRSRKHEKHRDSSDD 753


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
 Frame = +2

Query: 44  RTSEFERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDS-----RHRHPVAADS 208
           R S  +RH   K++    S  E      HR R+  ++     +DS      HRH  +  S
Sbjct: 666 RYSSKDRHSRDKHKHESSSDDEYHSRSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKHS 725

Query: 209 GPVHRKRVHRTHHL*NRK-RKNDDLEDE 289
             V   +  R+HH  +RK  K+ D  D+
Sbjct: 726 KDVDYSKDKRSHHHRSRKHEKHRDSSDD 753


>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
            protein KIAA0332 - Homo sapiens, EMBL:AB002330
          Length = 946

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 77   KNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*N 256
            K  D  +S ++R     HR  NK+ +PPR        H +  D      +   R H L N
Sbjct: 860  KREDSQESSKKR-----HRGENKSQSPPRKSSTRERDHDLGRDRDRERHRDRDRQHDL-N 913

Query: 257  RKR 265
            R R
Sbjct: 914  RDR 916


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,953,007
Number of Sequences: 28952
Number of extensions: 291841
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)