Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120223.Seq
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0113 + 20938357-20938730,20938820-20939057,20939140-209392...    29   3.6  

>09_06_0113 +
           20938357-20938730,20938820-20939057,20939140-20939264,
           20939682-20939715,20939804-20939850,20939948-20940079,
           20940420-20940484,20940613-20940685,20940790-20940946
          Length = 414

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = -3

Query: 720 LNPRKGNL-----SISNRKYDHGKTTIKGGNYKSVS 628
           +N RKG+      S S++KY  G+  +KGGN+K  S
Sbjct: 244 INKRKGSYCKFHSSKSSQKYSTGRVELKGGNFKFAS 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,310,305
Number of Sequences: 37544
Number of extensions: 376942
Number of successful extensions: 708
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)