Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120223.Seq
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b prot...    31   1.4  
U55372-2|AAA98001.1|  980|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b protein
           protein 49 protein.
          Length = 580

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 744 FLKHRLQVLNPRKGNLSISNRKYDHGKTTI-KGGNYKSVSLQERIFQI 604
           FLKH +  L P    LSI N + D  ++TI KG +Y+   +  +   I
Sbjct: 490 FLKHWMAGLKPELKYLSIENEEQDFDQSTILKGIHYEFAPIDRKFLMI 537


>U55372-2|AAA98001.1|  980|Caenorhabditis elegans Hypothetical
           protein C02G6.1 protein.
          Length = 980

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 457 HPSLTTLLFQY*KKMPLLAKRQATFCCFNFNICR 558
           H SLT  ++ Y +K PL  K   T C  NF I R
Sbjct: 579 HASLTLHVYGYDEKQPLFVK-HLTSCMINFKIDR 611


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,424,909
Number of Sequences: 27780
Number of extensions: 371204
Number of successful extensions: 792
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)