Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120223.Seq
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.3  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 200 SFIKLNIFYFAIPVDLPLEIESFDSPMG 283
           SF  LNI Y+ I V    E +  DSP+G
Sbjct: 479 SFGLLNICYWVIYVTYQEEFKWQDSPLG 506


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 804 LFFRMLSLQLSLPW 845
           LF+ ++SL++ LPW
Sbjct: 123 LFYLLVSLRIDLPW 136


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 804 LFFRMLSLQLSLPW 845
           LF+ ++SL++ LPW
Sbjct: 176 LFYLLVSLRIDLPW 189


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 85  QTSLVRDEGKPQGRGRSRSSLLIQTH 8
           +TS  R   + +GRGRSR   +I +H
Sbjct: 309 ETSRERSRDR-RGRGRSREHRIIPSH 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,024
Number of Sequences: 438
Number of extensions: 4449
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)