Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120223.Seq
         (854 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32680.1 68415.m03995 disease resistance family protein conta...    28   6.9  
At1g31120.1 68414.m03808 potassium transporter family protein si...    28   9.1  

>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +2

Query: 518 GKLHFVVLTLTFVEMFLVQVNKLNSKNSLIWNIRSCRDTDL*LPPFIVVLPWSYFRFDML 697
           G++   +  LT +    +  NKL S   L+ N+ +  + DL    F  V+P S     +L
Sbjct: 234 GQVPSTISNLTRLTKLYLDQNKLTSSFPLVQNLTNLYELDLSYNKFFGVIPSS-----LL 288

Query: 698 KLPFL 712
            LPFL
Sbjct: 289 TLPFL 293


>At1g31120.1 68414.m03808 potassium transporter family protein
           similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
           transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 796

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 420 YGFRVHIELLFKTLLQLSYVCKLSKCYMVLSLNFLLITKP*LCYY 286
           YG  V I +L  TLL +  +  + +C+ VL L F L++    C Y
Sbjct: 451 YGTAVVIVMLVTTLLMMLIMILVWRCHWVLVLLFTLLSLVVECTY 495


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,197,590
Number of Sequences: 28952
Number of extensions: 336028
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)