Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120222.Seq
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    29   0.69 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.1  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   2.8  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   4.8  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    26   6.4  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   6.4  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   8.5  

>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = -2

Query: 387 ILPSRFSVASSHNHFVGKQNERSVGFRQICVGHRQFLRQIVNFGITSFVSIS 232
           +LP+ F + +  +    +QN     F+++  G+R  +  IV++G+ S++ +S
Sbjct: 303 LLPTIFEIDALFSSTPLRQNMPQHMFQRLKEGYRNIIIAIVDYGVISYIRLS 354


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 100 LITKSGVIQLIMKSKLPYAIELQEWLL 180
           L+ K GV+ L+ K KLP+++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = +3

Query: 522 AFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHN 680
           ++ R + RS+GR ++      +   +  +PN+ N L+ V+  IP+N+ K KH+
Sbjct: 285 SYFREKVRSVGRLVRA-----ICILNHPIPNTDN-LDSVQIIIPQNQVKRKHD 331


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 256 AKIDDLTQKLTVANAD 303
           +KID LT+KL VANA+
Sbjct: 621 SKIDSLTEKLKVANAE 636


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 548 RSFLRAQKRKLVVATSHTARLWHSCGLLGLAITSCAMSAMRLGQLRR 408
           R+ +  +  +L  AT+    +W    L+  AIT C  S + L  + R
Sbjct: 334 RAKIMEEAEELCDATTKENVIWEMADLMYFAITRCVGSGVSLNDISR 380


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 529 CARKNDRWAAA*NDW 573
           C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 331 LFANEMIVARRDAETARQDCE 393
           +FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,828
Number of Sequences: 5004
Number of extensions: 65084
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)