Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120222.Seq
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213... 33 0.31
05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087... 31 1.3
02_05_0891 - 32554355-32555305 30 2.2
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 29 2.9
09_02_0374 - 8112021-8112820,8112908-8113152,8113256-8113455,811... 29 2.9
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 3.8
05_01_0429 + 3399266-3399708,3401320-3401382,3403919-3404345,340... 29 3.8
12_02_1092 - 26011445-26012071,26012826-26014022,26014083-260142... 29 5.1
05_05_0175 + 22966151-22967614 29 5.1
04_04_0765 - 27910189-27912393,27912521-27912598 29 5.1
02_05_0713 + 31159574-31160764 29 5.1
01_06_0635 + 30757442-30757772,30757885-30758025,30758270-307585... 29 5.1
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990... 28 6.7
10_02_0020 + 4280032-4280909,4281206-4281251 28 6.7
01_06_1510 - 37859664-37861319 28 8.8
>03_06_0559 +
34719296-34719410,34719519-34719577,34719664-34721322,
34722421-34722562,34722645-34723330
Length = 886
Score = 32.7 bits (71), Expect = 0.31
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 435 GHCARRDSQTQQPAAVPQPGRVRRGNNEFAFLRPQKRSLG-RSLKRLGSNDVIFSSDYVP 611
GH RR + T + ++P+PGR+ G RP + + RS +R+ N VI + P
Sbjct: 413 GHANRRQNSTAK--SIPKPGRLPDGRIHSVKTRPSDKDIADRSQRRVRHNIVI--DEQSP 468
Query: 612 NSMN 623
SMN
Sbjct: 469 FSMN 472
>05_06_0066 +
25307863-25307871,25308431-25308570,25308712-25308754,
25308994-25310022
Length = 406
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +1
Query: 259 KIDDLTQKLTVANADLA--EA-NRSLILFANEMIVARRDAETARQDCENARRK 408
+ID+L KLT +AD+A EA N L+ A E A ++ T +D E+A R+
Sbjct: 244 EIDELRAKLTSKDADIAAVEADNAELMKMAEEASHAVKETATKARDTEHALRE 296
>02_05_0891 - 32554355-32555305
Length = 316
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 27 PNPAPCSR*RGKAGRPAVFAPTHSAHYQIWRDSTDNEVQI 146
PNPAP G P V +P A ++IW ST++EV+I
Sbjct: 112 PNPAPKQGAEGNG--PKVSSPKRQAFHRIW--STEDEVRI 147
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 330 FVCQRNDCGSTRR*NGSARLRKRAP 404
FVC R C RR G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454
>09_02_0374 -
8112021-8112820,8112908-8113152,8113256-8113455,
8113584-8114235,8114369-8114661
Length = 729
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 302 IWRKPTDRSFCLPTK*LWLDATLKRLGKIAKTRAGNGAA 418
+W+KP D SF L W+ +R+ K+ + +G A
Sbjct: 635 LWQKPMDDSFSLDLSVAWVMQMQERIQKVTELATADGIA 673
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 120 HARFGNEHCVWVQIQRVALLCHA 52
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>05_01_0429 +
3399266-3399708,3401320-3401382,3403919-3404345,
3404863-3405141
Length = 403
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -2
Query: 495 GQAVAQLRVAGFGYHVLRNVRHAVGPAAPFPARVFAILPSRFSVASSHNHFVGKQNERSV 316
G Q+ A + R V H V AAP AR+ A + F++A + G +
Sbjct: 47 GAVARQVATACAAHGFFRCVGHGVPAAAPVAARLDAATAAFFAMAPAEKQRAGPASPLGY 106
Query: 315 GFRQI 301
G R I
Sbjct: 107 GCRSI 111
>12_02_1092 -
26011445-26012071,26012826-26014022,26014083-26014286,
26014316-26014385,26014440-26014479,26015566-26015632,
26015718-26015740,26017985-26018081,26018553-26018614,
26018913-26019297,26019924-26020007,26020383-26020467,
26020579-26020790,26020881-26021030
Length = 1100
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 599 AAKDDVVRTQSFQAAAQRSFLRAQKRKLVVATSHTARLWHSCGLLGLAITSCAMS 435
AA+ D V Q+F AA +F KLV+A S + + + L L + + A S
Sbjct: 266 AAEADAVAAQAFAEAAMATFKNRSSAKLVIALSTSVLVSNDHSSLKLPVGAGAAS 320
>05_05_0175 + 22966151-22967614
Length = 487
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 553 PSDRFCGRRNANSLLPRRTRPGCGTAAG 470
P D CGR+ +LP R PG G G
Sbjct: 128 PKDAACGRKVVREVLPPRPPPGRGGGGG 155
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/70 (31%), Positives = 28/70 (40%)
Frame = -2
Query: 564 SGCGPAIVFAGAETQTRCCHVAHGQAVAQLRVAGFGYHVLRNVRHAVGPAAPFPARVFAI 385
SG GPA A R +A G A + G + L + GPA P P RV +
Sbjct: 505 SGGGPAFP-ASPLCSRRSPLLADGIAASYAEPTGLFFDELDALAAEFGPAVPSPPRVSPV 563
Query: 384 LPSRFSVASS 355
PS +S
Sbjct: 564 PPSASGAGTS 573
>02_05_0713 + 31159574-31160764
Length = 396
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 378 SARLRKRAPETAQLAQPHGGHCARRDSQTQQPAAVPQPGRVRRGNN 515
+A LR AP +A + HG H RDS P P G N
Sbjct: 6 AASLRSLAPLSAYRSPSHGIHAVVRDSSAYTTRPPPPPPTADGGGN 51
>01_06_0635 +
30757442-30757772,30757885-30758025,30758270-30758539,
30758751-30758860,30759224-30759751
Length = 459
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 391 ENARRKRRSWPNRMADIAQDVIA 459
E+ARR+R SWP+R AD ++ A
Sbjct: 374 ESARRQRLSWPSREADELEEAEA 396
>10_08_0585 - 18998013-18998306,18998448-18998630,18999048-18999089,
18999226-18999495,18999903-19000454,19000546-19000770,
19001435-19001640,19001738-19001936,19002166-19002381,
19002887-19002991,19003127-19003243,19003366-19003548,
19004292-19004468,19004714-19004816,19005066-19005523
Length = 1109
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Frame = +1
Query: 325 LILFANEMIVARRDAETARQ---------DCENARRKRRSWPNRMADIAQDVIAKPSNPQ 477
L+L N+ ++A + E A++ D E ARRKR S N MA KP N Q
Sbjct: 1023 LVLLQNDSLIAAENMEKAQEVIAETCWEGDVEEARRKR-SELNEMAGFGAATSQKPGNEQ 1081
>10_02_0020 + 4280032-4280909,4281206-4281251
Length = 307
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = -1
Query: 373 FQRRVEPQSFRWQTK*AIGWLPPNLRWPP--SIFASDRQFWHNIICIHFNGRRVLAPCIA 200
F R P + T+ ++ WLPP RW I A++ H + +H + ++ +
Sbjct: 96 FATRSAPDAAGDHTRNSVPWLPPGPRWRELRKIMATELLATHRLDALHELRQEKVSELVD 155
Query: 199 LEE*PPPKAILVILWRKAIWTSLSVESRQIW 107
V + R A TSL++ SR I+
Sbjct: 156 HVARLARDGAAVDVGRVAFTTSLNLLSRTIF 186
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 84 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 176
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,668,547
Number of Sequences: 37544
Number of extensions: 520424
Number of successful extensions: 1830
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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