Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120222.Seq
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 0.97
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_34410| Best HMM Match : Remorin_C (HMM E-Value=1.5) 30 2.2
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26) 29 3.9
SB_29722| Best HMM Match : HLH (HMM E-Value=4.9e-14) 29 5.2
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033) 28 9.0
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06) 28 9.0
SB_7588| Best HMM Match : DcpS (HMM E-Value=0) 28 9.0
>SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 32.3 bits (70), Expect = 0.42
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 289 VANADLAEANRSLILFANEMIVARRDAETARQDCE-NARRKRRSWPNRMADIAQDVIAKP 465
V + D RS AN I ++RD T++ DC+ +A KR + N ++ + +I K
Sbjct: 45 VGSTDRLPFARSTSSLANNTIPSKRDKRTSKHDCDGSANNKRTNKHNDGSNNKRTIITKH 104
Query: 466 SN 471
N
Sbjct: 105 DN 106
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 31.1 bits (67), Expect = 0.97
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = -1
Query: 535 GRRNANSLLPRRTRPG-CGTAAGCWVWLSRLAQCPPCGWASCAVSGARFRNLAEPFQRRV 359
G N ++ RPG C W + R +C + C +G RFR+ + +R V
Sbjct: 2114 GGGNNKNVCSLPLRPGRCRARMVMWFYNKRTGRCQTFNYGGCGGNGNRFRSRRQCQRRCV 2173
Query: 358 E--PQSFRW 338
+ PQS R+
Sbjct: 2174 KGGPQSTRY 2182
>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1401
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +1
Query: 259 KIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRKRRSWPNRMAD 438
K +T+KLT A++ + L+ ++ R+D++ E R+ +S +R+AD
Sbjct: 1147 KTRGMTEKLTQITAEVDLKKKELLEAEQSLVKVRKDSDGVMTSVEERTRELKSLESRLAD 1206
>SB_34410| Best HMM Match : Remorin_C (HMM E-Value=1.5)
Length = 303
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = -3
Query: 428 RLGQLRRFRRAFSQSCRAVSASRRATIISL----ANKMSDRLASAKSALATVN 282
R+ QL + ++ S S R+ A+ R + S A +M+D+LA KSA A+ N
Sbjct: 128 RIRQLEKIKKTASSSTRSSDANARRAVRSNKLREALEMADKLAKEKSARASEN 180
>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 277 QKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRKR 411
+K+ A A L EA + L + I R+D ++ +DCEN R++
Sbjct: 5 EKVDPAEA-LLEAQQELATLQRQYICLRKDKKSYTEDCENVIRRQ 48
>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
Length = 906
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -3
Query: 428 RLGQLRRFRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRSS 264
R GQ++ F R F CR+V R TI++ K++D S + F +R+S
Sbjct: 443 RNGQVKHFGRVFPHDCRSV---RLGTILTSNRKVTDSTVHTDSVIE--KFRIRTS 492
>SB_29722| Best HMM Match : HLH (HMM E-Value=4.9e-14)
Length = 106
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 447 RRDSQTQQPAAVPQPGRVRRGNNEFAFLRPQKR--SLGRSLKRLGSNDVIFSSDYVPNSM 620
R+ + QP+A R+R N + A++ QK ++ K N ++ + DY+ +
Sbjct: 20 RKRASYDQPSANAIRERIRAQNLKKAYMELQKTLPNVPPDTKLPRLNILLLAIDYISHLT 79
Query: 621 NVLNKVKEAIPRNKFKAKHNRI 686
VL++ IP N KH+ I
Sbjct: 80 CVLSRQDAEIPCNDAILKHDMI 101
>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 545 SFLRAQKRKLVVATSHTARLWHSCGLLGLAITSCAMSA 432
S L KL +A SH+ LW G L ++IT+ +A
Sbjct: 455 SHLEQNGEKLEIAISHSHTLWPWSGFLAVSITAAKRAA 492
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 337 ANEMIVARRDAETARQDCENARRKRRSWPNRMADIAQDVIAKPSNPQLC 483
A+ ++V R DAE + RR+ N I ++ +K +NP LC
Sbjct: 3361 ASSLVVVREDAEPVAR---RRRRRAVDTSNTTTPITTNLTSKVTNPSLC 3406
>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 354 GSTRR*NGSARLRKRAPETAQLAQPHGGH-CARRD---SQTQQPAAVPQPGRVRRG 509
G+ RR + + P T Q A H C RD ++ + PA P PGRV G
Sbjct: 507 GTARRWHAFXXXXRTCPRTWQTASRTCTHACGCRDGSGARPEPPATRPHPGRVEAG 562
>SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +1
Query: 379 RQDCENARRKRRSWPNRMADIAQDVIAKPSNPQLCHSLAVCDVAT---TSLRFCARKNDR 549
R+DC N R RR Q++ AK P+ C S A+ ++R+C R R
Sbjct: 336 RRDCRNHPRVRRIGDFWQGQAMQELPAKKKKPKGCKSRDFASHASFGAIAMRYCGR--TR 393
Query: 550 W 552
W
Sbjct: 394 W 394
>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
Length = 311
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 277 QKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRKRRSWPNRMADI 441
+KL N ++ N+SL + A+ A ++ E ARR+R++ + AD+
Sbjct: 255 EKLISLNTEMESLNKSLRAATEKQKELETTAKKAEEEREQARRERQAALDSKADL 309
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 61 KQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVLCTAQVRA 225
K P HP TVLI +I L + + L I LQ L L+ +IP QVL V A
Sbjct: 325 KSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLIPLHVLA 381
>SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)
Length = 813
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 406 KRRSWPNRMADIAQDVIAKPSNPQLCHSLAVC 501
KRRSWP M DI Q+ + S L C
Sbjct: 457 KRRSWPMDMRDIKQNPVESASKEDLIFVQTQC 488
>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
Length = 446
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 594 SSDYVPNSMNVLNKVKEAIPRNKFKAKHNRITLLEDY 704
+ +++P N+LNK ++AI R K+ H+++ + Y
Sbjct: 342 NEEHIPLLKNILNKGRDAI-RTKYNVPHSQLRIYVHY 377
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,258,264
Number of Sequences: 59808
Number of extensions: 560228
Number of successful extensions: 1491
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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