Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120222.Seq
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4 ...    31   0.60 
At5g43720.1 68418.m05345 expressed protein                             29   3.2  
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    29   4.2  
At4g21200.1 68417.m03065 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   5.6  
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    28   7.4  
At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) ne...    27   9.8  

>At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4
           photolyase (UVR3) GB:AB003687 [Arabidopsis thaliana]
           (Nucleic Acids Res. 26 (2), 638-644 (1998))
          Length = 556

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 489 PGRVRRGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSD 602
           PG  R G N   FL    + L  SLK+LGS  ++F  +
Sbjct: 72  PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGE 109


>At5g43720.1 68418.m05345 expressed protein
          Length = 329

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 429 HGGHCARRDSQTQQPAAVPQPGRVRRGNN--EFAFLRPQKRSLGRSLKR 569
           HGG+  RRDS+ +Q A   +  +V R     +   ++ Q RS+ R L++
Sbjct: 3   HGGYAKRRDSEPKQTAGSSRRSKVLRVEKKPKTVSIKNQMRSVERFLRK 51


>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 510 NNEFAFLRPQKRSL-GRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHNRI 686
           NN      PQ  ++ G  ++  G+  + FSS    N  + ++  +  IP NK + K NRI
Sbjct: 486 NNNLVGPLPQSLNITGLEVRITGNPCLSFSSISCNNVSSTIDTPQVTIPINKKQRKQNRI 545

Query: 687 TLL 695
            +L
Sbjct: 546 AIL 548


>At4g21200.1 68417.m03065 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to gibberellin 20-oxidase from A.
           thaliana [gi:1109699], Phaseolis vulgaris [gi:2262201];
           contains Pfam domain PF03171, 2OG-Fe(II) oxygenase
           superfamily
          Length = 293

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = -3

Query: 530 QKRKLVVATSHTARLWHSCGLLGLAITSCAMSAMRLGQLRRFRRAFSQSCRAVSASRRAT 351
           ++ K   A +  +R W    ++   I+   +  MR  Q+R FR  F +   +      + 
Sbjct: 57  EREKCKEAIARASREWGFFQVINHGISMDVLEKMRQEQIRVFREPFDKKSNSTMEKFASE 116

Query: 350 IISLANKMSDRLA--SAKSALATVNFCVRSSILA*HHLYP 237
             +LA  +++ LA  S +++      CVR++     + YP
Sbjct: 117 SEALAYMLAEVLAEKSGQNSSFFKENCVRNTCYLRMNRYP 156


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -3

Query: 443 AMSAMRLGQLRRFRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALAT 288
           A     + +L R     SQ  RA SASR A IISL  K++        +L++
Sbjct: 305 AWKRQEMARLAREHEVMSQE-RAASASRDAAIISLIQKITGHTIQLPPSLSS 355


>At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K)
           nearly identical to gi:4467359
          Length = 1121

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 16  EH-ADQIQHHAPDSVAKQGDPLYLHPHTVLITKS 114
           EH A Q+  H  D   + G PL+L P+ VL+T S
Sbjct: 872 EHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSS 905


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,146,018
Number of Sequences: 28952
Number of extensions: 369889
Number of successful extensions: 1038
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)