Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120218.Seq
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632...    32   0.44 
10_08_0617 + 19291107-19292669                                         29   4.1  
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    29   4.1  

>07_03_1576 -
           27862043-27862129,27862935-27862988,27863042-27863243,
           27865015-27865249,27865338-27865404,27865489-27865639,
           27866898-27866957,27867402-27867466
          Length = 306

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +2

Query: 332 LDTCKHQLCSMCXXXXXXXXXXPCPLCR-----VESLHFNVYSINRNVVDV 469
           L TC H +C  C           CP CR     V S    +Y+ NR++VD+
Sbjct: 178 LPTCSHAMCIKCYRDWRSRSQS-CPFCRDSLKRVNSADLWIYTDNRDIVDI 227


>10_08_0617 + 19291107-19292669
          Length = 520

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 529 RHQNYRLFIPLCDTRHAAFNHVHNVSVYAVNVEMQTF 419
           R Q   LF+PL D R A  NH+       V  +  TF
Sbjct: 249 RRQQKELFVPLIDARRARKNHIQQAGGPPVPEKETTF 285


>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 257 CFSVAEIKNYFMQPIDRLTIIPVLELDTCK 346
           CFS     N++M+PI+ LT++  +++DT +
Sbjct: 237 CFSTEGTANFYMRPIEGLTVL--VDMDTAE 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,781,820
Number of Sequences: 37544
Number of extensions: 237599
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)