Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120218.Seq
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)              31   0.79 
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)              31   0.79 
SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)                   27   9.7  

>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
          Length = 688

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 19/88 (21%), Positives = 34/88 (38%)
 Frame = +2

Query: 233 VCQIAMQLCFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLC 412
           +CQ  +     +   K  F+ P  ++ +   + L TCKH  C  C           CP+C
Sbjct: 463 ICQEELAEPIMLRTCKVCFVMPTCQVKLAKQIMLRTCKHIFCEDC-ISLWFDREQTCPMC 521

Query: 413 RVESLHFNVYSINRNVVDVIKCSVTSVA 496
           R       ++        V + SV +++
Sbjct: 522 RARVAGDPMWRDGTTAAAVARLSVATLS 549


>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
          Length = 337

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 341 CKHQLCSMCXXXXXXXXXXPCPLCRV 418
           C+H+ C MC           CP+CR+
Sbjct: 52  CEHEFCKMCFTQNVQEANLQCPMCRI 77


>SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 287 FMQPIDRLTIIPVLELDTCKHQLC 358
           F QP  RL+ IPV+E   C H +C
Sbjct: 47  FTQPCPRLSGIPVVEASVCHHIIC 70


>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +2

Query: 47  RRTFRC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFS 196
           RR   C FW     + K L      C+T    +Q  TL+   A A W+++ +VLFS
Sbjct: 524 RRARECIFWPGMPAEIKQLASVCDACQTFAKAQQKETLIAIEAKAPWEIVGVVLFS 579


>SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)
          Length = 637

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +2

Query: 47  RRTFRC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFS 196
           RR   C FW     + K L      C+T    +Q +TL+   A A W+++ + LFS
Sbjct: 450 RRARECIFWPGMSAEIKQLASVCDACQTFAKAQQKKTLITIEAKAPWEIVGVDLFS 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,629,517
Number of Sequences: 59808
Number of extensions: 294118
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)