Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120218.Seq
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    34   0.099
Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    30   1.6  
AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical ...    30   1.6  
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.     27   8.6  

>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +2

Query: 254 LCFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESLHF 433
           LCF   ++     +P D   ++PV  L  C H +C +C           CP+C       
Sbjct: 10  LCFQCGKLYESITKPDDEAILVPV--LGACLHSICILC--ATGLESPNSCPICENPEAFG 65

Query: 434 NVYS 445
           N+ S
Sbjct: 66  NIIS 69


>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 296 PIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRNVVDV 469
           PI +  +I    +  C H+ C +C           CP+CR   +  N+++    V+D+
Sbjct: 13  PICQCKMIVPTTIPACGHKFCFICLKGVYMNDMGGCPMCR-GPIDSNIFAQPSQVLDL 69


>AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical
           protein B0281.8 protein.
          Length = 292

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +2

Query: 341 CKHQLCSMCXXXXXXXXXXPCPLCR--VESLHFNVYSINRN--VVDVIKCSVTSVAQWNK 508
           C H LC  C           CP CR   E   +N+ S+++N  ++ +IK  VT   +  K
Sbjct: 28  CSHTLCEGCIKKLLKNGRVVCPFCREPTEVPVYNIKSLHKNFSLIQMIKI-VTKTTEVEK 86


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 338 TCKHQLCSMCXXXXXXXXXXPCPLC--RVESLHFN 436
           TCKH +C+ C           CP+C  RV  +H N
Sbjct: 41  TCKHSICAGCAGRWLSSCSV-CPMCRTRVREIHLN 74


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +2

Query: 341 CKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRNVVDVI 472
           C H  C  C           CP C   S   N +S N+ +++V+
Sbjct: 158 CGHTYCESCIQVCKHQFQIKCPFCTTTSYQIN-FSTNKLILEVL 200


>AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical
           protein B0281.3 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +2

Query: 341 CKHQLCSMCXXXXXXXXXXPCPLCR--VESLHFNVYSINRN--VVDVIKCSVTSVAQ 499
           C H LC  C           CP CR   E    N+ S+++N  ++ VIK ++   A+
Sbjct: 57  CCHTLCEGCIKKLLNYSRIVCPFCREPTEVPGNNIKSLHKNFSLIQVIKTTLVEEAE 113


>AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical
           protein F42G2.5 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 341 CKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRN 457
           C H +C  C           CP CR E+   +V S+ +N
Sbjct: 155 CGHSICQSCASKLAKNCVILCPFCRNETNVSSVASLPKN 193


>Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical
           protein T15D6.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 54  RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 146
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 338 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 371


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 338 TCKHQLCSMCXXXXXXXXXXPCPLCR 415
           TC H LC  C           CP CR
Sbjct: 26  TCGHALCHKCITAMVNNSTVECPFCR 51


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +2

Query: 332 LDTCKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRNVVDVIKCSVTSVAQ--WN 505
           + +C H LCS C           CP+C+   +    Y   R +V+  K + T + +  WN
Sbjct: 51  VSSCNHSLCSQC-----FDKFTECPICKEPLVRSENYQA-RKIVEHFKENPTMIIEKWWN 104


>AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 54  RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 146
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 230 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,489,590
Number of Sequences: 27780
Number of extensions: 227962
Number of successful extensions: 554
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)