Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120217.Seq
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    69   8e-13
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   7.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 31/48 (64%), Positives = 39/48 (81%)
 Frame = +3

Query: 513 AVGITAFLL*LSLPVLAGAMTILLTDRNLITSFFDPAGGGDPILYQHL 656
           A+ IT+ LL L+LPVLAG + +L +DRNL TSF+ P GGGDP+LYQHL
Sbjct: 194 AIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHL 241



 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +2

Query: 74  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 247
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 248 NNKDFDSYPPPL 283
           NN  F   PP L
Sbjct: 105 NNFTFWLLPPAL 116



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 30/68 (44%), Positives = 35/68 (51%)
 Frame = +1

Query: 304 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 483
           + E G G G TVYPPLSS  +H G ++DLAI SL L GISS                   
Sbjct: 124 LTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGL 183

Query: 484 SFDQLPLF 507
           S  Q+PLF
Sbjct: 184 SLYQMPLF 191


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 239 PRINNKDFDSYPPPLYYXFQEEL*KMVQEQDEQFTPHFHLISHIEE 376
           PR+ NK+    P P+    ++ L + V+ QD  F P    I+ +EE
Sbjct: 6   PRVKNKN----PAPIQISAEQLLREAVERQDVAFVPPKINITDLEE 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,356
Number of Sequences: 5004
Number of extensions: 31463
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)