Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120216.Seq
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    28   1.5  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    27   2.5  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   2.5  

>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = -3

Query: 765 HWYTKPRLQ------CNSLV*TSSCTYAARYIVFFQIAQYFLYARRHIDLAVQHVDDI 610
           H Y +P +       C SL     CT     I    + + F++ R+H ++ V  VD+I
Sbjct: 123 HSYVRPSMNPTLSDYCKSLTGIQQCTVDKAPIFSDVLEELFIFLRKHSNILVPSVDEI 180


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 161 DCNKFLRSDDMTPVVTTITPKRTADYKITEYAVTLKLL 274
           +C++F++ +  + V   I+ K    Y++++   TLKLL
Sbjct: 301 ECSEFIKDNHTSRVAILISMKLAFQYQLSQVIPTLKLL 338


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 149 GTSFDCNKFLRSDDMTPVVTTITPKRTADYKITEYAVTLKL 271
           G +FD  K + S+++  V+  I P+ T  YK++  A  L L
Sbjct: 395 GCNFDLYKKIVSNNVESVLVEIIPRLTEKYKVSFLAGALDL 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,678
Number of Sequences: 5004
Number of extensions: 70499
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)