Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120216.Seq
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990...    29   3.5  
06_01_0236 + 1804368-1804374,1804514-1804532,1804652-1805011,180...    29   3.5  

>12_01_0977 -
           9900073-9900521,9900594-9900698,9900770-9900959,
           9901035-9901093,9901297-9901688,9901770-9902059,
           9902146-9903030
          Length = 789

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 317 KKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVFYN 466
           K+     D   NV +PL+ A  L+      +D  +  DKL + P   F N
Sbjct: 658 KRLEGARDEVANVATPLVQAMFLNNSGPSALDATEIFDKLRVAPDVYFKN 707


>06_01_0236 +
           1804368-1804374,1804514-1804532,1804652-1805011,
           1805214-1805248,1805306-1805385,1805488-1805701,
           1805972-1806111,1806197-1806235,1806328-1806369
          Length = 311

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 758 YQCENRCLIKALTHFYNYDSNV 823
           Y+ +NRCL++AL   YN D N+
Sbjct: 144 YEKDNRCLVQALVEKYNDDHNL 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,003,040
Number of Sequences: 37544
Number of extensions: 438158
Number of successful extensions: 929
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)