Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120216.Seq
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.89 
SB_28885| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81)                28   8.3  
SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.3  

>SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 208 NDHAQKNCRLQNYRVRSDVKTIKPSNRPLVESGPLVQEAAKYGRCTV 348
           N +A + C L N+R+R  V+T +PS+ P   +G   Q  +   RC +
Sbjct: 612 NSYANR-CVLPNHRIRQQVRTTRPSHTP---TGAFYQTISYANRCVL 654


>SB_28885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 208 NDHAQKNCRLQNYRVRSDVKTIKPSNRPLVESGPLVQEAAKYGRCTV 348
           N +A + C L N+R+R  V+T +PS+ P   +G   Q  +   RC +
Sbjct: 41  NSYANR-CVLPNHRIRQQVRTTRPSHTP---TGAYYQTISYANRCVL 83


>SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81)
          Length = 196

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 60  VASQHDYDRDQIKRELNSLRRNVHD 134
           ++S+H+ ++D+I+ ELN  RR + +
Sbjct: 130 MSSKHNQEKDEIREELNETRRKLEE 154


>SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 60  VASQHDYDRDQIKRELNSLRRNVHD 134
           ++S+H+ ++D+I+ ELN  RR + +
Sbjct: 130 MSSKHNQEKDEIREELNETRRKLEE 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,474,948
Number of Sequences: 59808
Number of extensions: 548533
Number of successful extensions: 1308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)