Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120216.Seq
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine re...    31   1.0  
Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF000198-9|AAB53057.4|  684|Caenorhabditis elegans Hypothetical ...    29   5.5  

>AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein9 protein.
          Length = 293

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -3

Query: 684 FFQIAQY-FLYARRHIDLAVQHVDDIIFSFYAFFHTNVSFAAF 559
           F+QI+ Y F  A + I + V  +D +IF  Y FF+ ++SF+ +
Sbjct: 79  FWQISFYIFFQAAQGIIMLVIVIDILIFVKYPFFYRSISFSTY 121


>Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical
           protein T27D12.1 protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -1

Query: 680 FKSPNIFCMHGGILILLFSMSTTLFF---PSTHSFI 582
           FK P+IF  HG + +LLF ++  LF+   P  H F+
Sbjct: 194 FKWPSIFYAHGAVSLLLF-VTYALFYRNSPQKHPFV 228


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 663 FLYARRHIDLAVQHVDDIIFSFYAFFHTNVSFAAFFKIGIFN 538
           +LY    I   +  + ++IF F+AF+  +V    + KI +F+
Sbjct: 20  YLYNEPDIVRIIVSITELIFYFFAFYINSVCLKVYLKIQLFH 61


>AF000198-9|AAB53057.4|  684|Caenorhabditis elegans Hypothetical
           protein T28F2.7 protein.
          Length = 684

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 693 YIVFFQIAQYFLYARRHIDLAVQHVDDIIFSFYAFFHTNVSFAAFFKIGIFNC 535
           Y++ F      LY R   D A  H  D +F  Y   H N +   FF    F+C
Sbjct: 181 YLMMFNSDAMTLYGRA--DAASLHSGDNVFKHYVSSHPNFTADNFFMDAGFSC 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,545,568
Number of Sequences: 27780
Number of extensions: 415035
Number of successful extensions: 1032
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)