Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120216.Seq
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.6  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   4.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.2  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   8.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   8.2  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +1

Query: 235 LQNYRVRSDVK 267
           L+N+RVRSDVK
Sbjct: 506 LRNFRVRSDVK 516


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 404 LIDPDDFIDKLTLTPYTVFYNGGVLVKISGLRLYMC*RLRPL 529
           L+ P+ F DK+ LT   ++ N    ++++ L L      RPL
Sbjct: 631 LVRPNTFTDKVNLTRVDMYANMIETMELTSLLLTKVAEDRPL 672


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 778 FDQGSDTFLQLRLQCVGEVMHLL 846
           FDQ S+ F QLR++ +G+  + +
Sbjct: 305 FDQLSERFEQLRIKILGDCYYCI 327


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 206 SLRGSCHRCVETCYNQNSCLNA 141
           S+R    +CV+   N++ CL A
Sbjct: 93  SIRKIIRQCVDNAKNEDKCLTA 114


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 433 IDPNSIHGILQWRGF 477
           + P S+HG L WR F
Sbjct: 298 VPPLSLHGQLLWREF 312


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 296 SNRDRWCKKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVF 460
           +N+D +CKK R      +++   L++A    K A   +D   + D L L  Y VF
Sbjct: 4   NNQDTFCKKMRKATKEIHSISDSLVNA----KLAFGFLDNSVWADGL-LVFYEVF 53


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 577 ICMKECVEGKNNVVDMLNSKINM 645
           +CMKE    +  + D+   KINM
Sbjct: 32  VCMKEIGTAQQIIDDINEGKINM 54


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 326 RNMADAPYNVWSPLISASCLDKKATYL 406
           R++  A   V +PLIS   L  K TY+
Sbjct: 115 RSLLSADVAVATPLISMGALLGKTTYM 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,702
Number of Sequences: 438
Number of extensions: 5166
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)