Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120216.Seq
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR ...    34   0.10 
At5g28190.1 68418.m03413 hypothetical protein                          29   3.0  

>At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 857

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = -1

Query: 818 WSRNCKNVSEP*SNIGFHIGTRNH-VCNV-TV*YKPLPVHTPRGTLFFFKSPNIFCMHGG 645
           W R C+N+    SN G   G++N  V +V  + Y+ LP H  +  L+F   P  + +H G
Sbjct: 385 WQRVCENIKSYVSNGGSSNGSKNMLVADVLCLSYEYLPPHVKQCFLYFAHYPEDYEVHVG 444

Query: 644 ILILLFSMSTTLFFPSTHS 588
            L+  + ++  +  P  H+
Sbjct: 445 TLV-SYCIAEGMVMPVKHT 462


>At5g28190.1 68418.m03413 hypothetical protein
          Length = 839

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 211 DHAQKNCRLQNYRVRSDVKTIKPSNRPLVESGPLVQEAAK 330
           +H Q +C L   +  SDVKTI P+N+   +   ++Q   K
Sbjct: 710 NHLQPSCALIRKQYTSDVKTISPANQEEEDLEGMMQRIKK 749


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,922,168
Number of Sequences: 28952
Number of extensions: 363139
Number of successful extensions: 867
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)