Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120215.Seq
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.46
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 28 1.4
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 27 2.5
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 27 3.3
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 4.3
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 26 7.5
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 7.5
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 26 7.5
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 10.0
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 10.0
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.46
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +1
Query: 556 AFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 735
AF H F ++ + N +E N + P+L T+ L +D P ++++ +
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437
Query: 736 FDTEALVNF 762
+T ++NF
Sbjct: 1438 ENTPLILNF 1446
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 367 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 266
GF+ + I A+ F DRS VAF +F + L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 2.5
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = -2
Query: 755 TKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLVKLVTS 582
+++SV + I + GLS ++ + + + +G+P +S VSVT N ++ + T+
Sbjct: 182 SQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNYTVNTN 241
Query: 581 GW---NLLCIKANVLN 543
GW N C+ V N
Sbjct: 242 GWTSSNFKCVDDVVAN 257
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -1
Query: 480 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLT 301
+ R+LSIA +LLS + + R+ + + N+ S V + T SV V+ L +
Sbjct: 14 LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69
Query: 300 RFIFIHLSTTF 268
R+ + T+
Sbjct: 70 RYYYEQEDVTY 80
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 439 GAQQIHGYAQHPGNDPAAVGNI*NKADTRQIAAVVFSTLAFIHNR 573
GA++I +Q P + ++ GN K + QI+ +V+ + F +R
Sbjct: 326 GAKKIAKCSQRPPKESSSTGNHYPKLEQYQISDMVYDIICFASDR 370
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 648 GNACVISFSDHKLHFVSKISNK 583
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 556 AFIHNRFHPLV---TNFTNKMEFVVTETNDTS 642
AFI N++ PLV T++TN V +TN S
Sbjct: 112 AFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 651 SGNACVISFSDHKLHFVSKISNKW 580
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 48 NSKHVFDHFGCSSNYCFNNYV 110
N VF+H CS Y FNN V
Sbjct: 2 NGLRVFEHVHCSVLYKFNNIV 22
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 611 SILLVKLVTSGWNLLCIKANV 549
S +L L+ GW ++C ANV
Sbjct: 19 SCILAWLIEEGWEVICYMANV 39
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 10.0
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -2
Query: 809 RGAKRLGYPHVAVIVLKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSL 630
+GAKR+ + VA L +ILT+DG T SVN + G V++
Sbjct: 3 QGAKRVRFYIVAADGLSKRDLFRQPDPFAILTVDGEQTHTTKVIKKSVNPYWNEGFEVTV 62
Query: 629 VSVTTNSILL 600
+ SI L
Sbjct: 63 KPSSVISIRL 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,475
Number of Sequences: 5004
Number of extensions: 57398
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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