Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120215.Seq
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253     32   0.64 
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388     32   0.64 
06_03_0757 + 24267599-24268882                                         29   4.5  
03_01_0298 + 2318836-2319051,2321238-2323106                           29   4.5  
09_06_0341 + 22406709-22407860                                         28   7.9  
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552     28   7.9  
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72...    28   7.9  

>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
          Length = 326

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +2

Query: 284 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 463
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++ E    + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 464 LSTLEMTQ 487
             TL++ Q
Sbjct: 290 AETLDVKQ 297


>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
          Length = 327

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +2

Query: 284 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 463
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++ E    + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 464 LSTLEMTQ 487
             TL++ Q
Sbjct: 290 AETLDVKQ 297


>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 435 NWRSANTWLCSAPWK*PSRCWK 500
           +WR A  W+C  PW    + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>03_01_0298 + 2318836-2319051,2321238-2323106
          Length = 694

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 45  ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 143
           A   H F HF C SSN    NYVC + +  WK+L
Sbjct: 92  AECSHEF-HFHCISSNVNHGNYVCPVCRAEWKEL 124


>09_06_0341 + 22406709-22407860
          Length = 383

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +2

Query: 227 LPCELIPL*NASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSS 406
           +P   I   N++ A       +MK V       + E+  +D  +++  EL+  DLKNL+ 
Sbjct: 289 IPERCIVFGNSNSAVEAAHDARMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNLAD 348

Query: 407 LESYE 421
           +ES E
Sbjct: 349 IESPE 353


>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
          Length = 471

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/77 (25%), Positives = 32/77 (41%)
 Frame = -2

Query: 767 VLKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVKLV 588
           +LK   A  S  RL + + +   T+H ST S    K   P    ++  V+TN    V   
Sbjct: 145 LLKLESAEESKERLKLESAEESQTQHQSTTSAINEKNMPPVHEEAIAQVSTNDCNDVATA 204

Query: 587 TSGWNLLCIKANVLNTT 537
           +    L+    + +N T
Sbjct: 205 SKTDELITSNVSSINNT 221


>02_01_0099 +
           726576-727105,727899-728048,728510-728635,728726-729714,
           729776-729818,730101-730218,730743-730853
          Length = 688

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 398 LSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRTKQTLGK 529
           L    S +T K    LS ++A+ S +      +++FR  Q LGK
Sbjct: 398 LGQYNSEKTRKFHKYLSSHLALRSAMSRRHLFMDLFRAYQLLGK 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,220,655
Number of Sequences: 37544
Number of extensions: 351065
Number of successful extensions: 845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)