Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120215.Seq
         (831 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.16 
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)                 30   2.0  
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            29   3.5  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         29   4.6  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_41618| Best HMM Match : OEP (HMM E-Value=0.56)                      29   6.1  
SB_39148| Best HMM Match : OEP (HMM E-Value=0.33)                      29   6.1  
SB_15032| Best HMM Match : OEP (HMM E-Value=0.24)                      28   8.1  
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.1  
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -2

Query: 812  LRGAKRLGYPHVAVIVLKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVS 633
            ++G  RLGY  V+   L++T+  +   R  ++T+  L T HN        +M + G L +
Sbjct: 932  VKGCSRLGYLDVSWNQLQYTREELGMMRKHLITLTYLDTRHNPWQKTETLRMRALGRLKN 991

Query: 632  L 630
            L
Sbjct: 992  L 992


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = -2

Query: 761 KFTKASVSNSRLSILTIDGLSTEHNSTPSFSVN-KMGSPGMLVSLVSVTTNSILLVKLV 588
           +F +   +NS    LT++ L  + + T + S    +G   ++VS+ SVTTNS++LV ++
Sbjct: 746 RFERFEHNNSLEIKLTVNILQNQGSRTMTSSYYLAIGILSIIVSITSVTTNSLILVVII 804


>SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)
          Length = 435

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 443 LSKYMAMLSTLEMTQPLLEIFRTKQTLGKLPPWCLAH*LLYTIDSI 580
           +S    ML+ L  T PL+ +  T++TLG++P +C    L  T+  +
Sbjct: 87  ISASCLMLTLLSYTVPLISMNATQKTLGEVPLFCYWSALFETLGCV 132


>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 281 KCIKMKRVKCNKVR-TVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 457
           K  + KR    K++ T  E+V   +K +K + L + +LK L   E Y+ LK K  L KY+
Sbjct: 68  KSAEAKRESKKKIKETERELV---QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 788 YPHVAVIVLKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSP 648
           Y ++  + L  + A+ S+S ++   +  LST   STPS S   + +P
Sbjct: 180 YVNIGSVELSSSAATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTP 226


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -2

Query: 809  RGAKRLGYPHVAVIVLKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMG 654
            RG  R+G       V  F  +    +++ ++  DG+S +  +TP+  + KMG
Sbjct: 2505 RGGTRIGRALDHARVRLFRSSRKGAAKILVMITDGISQDRVTTPALRLKKMG 2556


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 495 WKYLEQSRHSANCRR 539
           WKYL +SRH   CRR
Sbjct: 488 WKYLHESRHQHACRR 502


>SB_41618| Best HMM Match : OEP (HMM E-Value=0.56)
          Length = 355

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +2

Query: 260 SKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKT-YELAEFDLKNLSSLESYETLKIK 436
           +K  + +   K+ + K        ++ N+  K+  T Y+LA+   K  ++       K K
Sbjct: 80  TKYKLANTKYKLAKAKYKLANAKYKLANAKYKLANTKYKLAKAKYKLANAKYKLAKAKYK 139

Query: 437 LALSKYMAMLSTLEMTQPLLEIFRTKQTLGK 529
           LA +KY    +  ++ +   ++  TK  L K
Sbjct: 140 LAKAKYKLAKAKYKLAKAKYKLANTKYKLAK 170


>SB_39148| Best HMM Match : OEP (HMM E-Value=0.33)
          Length = 208

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 290 KMKRVKCNKVRTVTEIVNSDEKIQKT-YELAEFDLKNLSSLESYETLKIKLALSKYMAML 466
           K+ + K    +   ++  +  K+ K  Y+LA+   K + +       K KLA +KY    
Sbjct: 53  KLAKAKYKLAKAKYKLAKAKYKLAKAKYKLAKAKYKLVKATYKLANAKYKLAKAKYKPAK 112

Query: 467 STLEMTQPLLEIFRTKQTLGK 529
           +T ++ +   ++   K  L K
Sbjct: 113 ATYKLAKAKYKLANAKNKLAK 133


>SB_15032| Best HMM Match : OEP (HMM E-Value=0.24)
          Length = 312

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 290 KMKRVKCNKVRTVTEIVNSDEKIQK-TYELAEFDLKNLSSLESYETLKIKLALSKYMAML 466
           K+   K    +   ++V +  K+ K TY+LA+   K   +       K KLA +KY    
Sbjct: 11  KLANAKYKLAKATYKLVKATYKLAKATYKLAKAKYKLAKAKYKLAKAKYKLAKAKYKLAK 70

Query: 467 STLEMTQPLLEIFRTKQTLGK 529
           +  ++ +   ++ + K  L K
Sbjct: 71  AKHKLAKAKYKLAKAKHKLAK 91


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 622 TETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 729
           +E  D SI   P +   N G L+C VDR SI ++ S
Sbjct: 37  SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71


>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 520 CLLCSKYFQQRLGHFQGAEHSHVFAERQF 434
           CL+C KYFQ R  H     HS  F    +
Sbjct: 75  CLICGKYFQGRGRHSYAYTHSVQFGHHVY 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,698,180
Number of Sequences: 59808
Number of extensions: 422022
Number of successful extensions: 1058
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)