Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120215.Seq
         (831 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U58737-3|AAM69082.2|  189|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   4.1  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan pr...    29   5.4  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   7.1  
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    28   9.4  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    28   9.4  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    28   9.4  
AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 731 RLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVK 594
           RL+I  I GLS+  +STPS  V++   P  L S+V++     L  +
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAINDQEWLFFR 305


>U58737-3|AAM69082.2|  189|Caenorhabditis elegans Hypothetical
           protein ZK54.3 protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
 Frame = -2

Query: 815 ALRGAKRLGYPHVAVIVLKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLV 636
           A+  +KR    H+  ++  F  A +  +++++        +  +     V  +G   + +
Sbjct: 18  AIDDSKRWKRRHLVAVLAMFGFAFIYGTQITLSNTFMEDEQKVNKTKIPVKFIGQ-AVFL 76

Query: 635 SLVSVTTNSILLVKL--VTSGWNLLCIKANVLN 543
            LV+ T+NSILLV L  ++SG+  +C    ++N
Sbjct: 77  FLVTTTSNSILLVTLFSISSGFGGICWSGFLVN 109


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
            R03E1.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 619  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 720
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 619  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 720
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 713 IDGLSTEHNSTPSFSVNKMGSPGML 639
           I  L T H STPS    ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166


>U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan
           protein 3 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 794 LGYPHVAVIVLKFTKASVSNSRLSILTID--GLSTEHNSTPSFSVNKMGS 651
           LG+P   VI L+F   +++ S +SIL I+   LS ++ +  SF  N   S
Sbjct: 74  LGFPRTRVIFLEFLANAMNISSISILNIEYIRLSPDNMTIVSFHNNSKDS 123


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 647 PENPFCLQKTRGCCCAPSTD 706
           PEN FC + T G CC P  D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 18  CAVRKLFKQANSKHVFDHFGCSSNYCFNN 104
           C  R+ F +   K  F++F CSS    NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 302 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 421
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 302 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 421
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 302 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 421
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 713 IDGLSTEHNSTPSFSVNKMGSPGML 639
           I  L T H STPS    ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 407 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 306
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 407 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 306
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical
           protein W10C4.1 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 638 VSLVSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALF*IFPTAAGSF 477
           + L  V  N++ ++ LV    N    +AN+  T  A+C VS L  I P +  +F
Sbjct: 32  ICLFGVVGNALTILVLVN---NDFMSRANIFLTCLAVCDVSFLILIIPHSLANF 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,966,728
Number of Sequences: 27780
Number of extensions: 326554
Number of successful extensions: 911
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)