Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120215.Seq
         (831 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02920.1 68418.m00235 F-box family protein low similarity to ...    31   0.94 
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar...    31   1.2  
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar...    31   1.2  
At4g29560.1 68417.m04215 expressed protein                             30   2.2  
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    29   2.9  
At4g11070.1 68417.m01798 WRKY family transcription factor other ...    29   3.8  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    29   3.8  
At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family p...    29   5.0  
At1g77580.2 68414.m09032 myosin heavy chain-related low similari...    28   8.7  
At1g77580.1 68414.m09033 myosin heavy chain-related low similari...    28   8.7  

>At5g02920.1 68418.m00235 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 345

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -1

Query: 462 IAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLTRFIFIH 283
           I  ++   NL+ R S LSK  R   S + +    W+  S   I+ T+ +    ++    H
Sbjct: 41  ILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTLASYT-ASKITSFH 99

Query: 282 LSTTFAFEAFH 250
           L T++++EA H
Sbjct: 100 LCTSYSYEAGH 110


>At4g28760.2 68417.m04113 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 404 SLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRTKQTLGKL 532
           S ES    + K  LS+  A++S    TQPL  + RT  TLG++
Sbjct: 458 SPESSVCREAKKRLSERWALMSVSGRTQPLKHVSRTSSTLGEM 500


>At4g28760.1 68417.m04112 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 404 SLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRTKQTLGKL 532
           S ES    + K  LS+  A++S    TQPL  + RT  TLG++
Sbjct: 458 SPESSVCREAKKRLSERWALMSVSGRTQPLKHVSRTSSTLGEM 500


>At4g29560.1 68417.m04215 expressed protein 
          Length = 493

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -2

Query: 743 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVKLVTSGWN 573
           +SN  L     D +    +S P +   K+GS G ++  + V+ + +    LV   WN
Sbjct: 135 ISNLDLDSADEDSMKQVFDSVPDWLSEKLGSAGTILPWLPVSCDDVDSEMLVVDSWN 191


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 699 DGAQQHPLVFCKQNGFSGNACVISFSDHKLHFVSKISNKW 580
           DG+   PL+        G  C++ F D  +HF S I+N++
Sbjct: 799 DGSSTSPLLDLFPTSSEG--CILVFDDSDMHFTSSIANRY 836


>At4g11070.1 68417.m01798 WRKY family transcription factor other
           putative proteins, Arabidopsis thaliana
          Length = 313

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 743 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLV-SLVSVTTN 612
           VS+ + +IL ++G +T+HN T   + + +  PG +  S  S+T N
Sbjct: 53  VSSFKKAILMLNGSTTQHNPTIELAPDPLAHPGKVPGSPASITGN 97


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein
           (Atm) identical to ataxia-telangiectasia mutated protein
           (Atm) [Arabidopsis thaliana] GI:7529272; contains Pfam
           profile PF00855: PWWP domain; contains GA donor splice
           site at exon 73
          Length = 3255

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +2

Query: 245 PL*NASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYET 424
           PL   S A+   K  +++  K + + ++  +  +D + QKT+EL   +  N+ SL    T
Sbjct: 420 PLNGVSVADTEQKTFELQISKKSNIESLNGVSVADTE-QKTFELQILEKSNIESLNGVST 478

Query: 425 LKIKLALSK 451
             I    SK
Sbjct: 479 PNIDHEASK 487


>At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857
          Length = 278

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +2

Query: 278 DKCIKMKRVKC-NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSS----LESYETLKIKLA 442
           D  IK K +   +K +T+T +  S++ I      +E +L+N+      L+ Y+ LK++  
Sbjct: 42  DLFIKTKLIAAIDKYQTITVLAVSNDAISSITNRSEVELRNILMTHVILDYYDELKLQ-G 100

Query: 443 LSKYMAMLSTLEMTQPLLE 499
           + +   ML+TL  T  L E
Sbjct: 101 MREKSIMLTTLYQTTGLGE 119


>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 779

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 302 VKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLES-YETLKIKLALSKYMAMLSTLE 478
           VKCN+   V  I NS+    +T EL E     L  LE+  E LK ++  ++  A++    
Sbjct: 373 VKCNREEAVVHIENSEVLTSRTKELEE----KLEKLEAEKEELKSEVKCNREKAVVHVEN 428

Query: 479 MTQPLLEIF--RTKQ 517
                +E+   RTK+
Sbjct: 429 SLAAEIEVLTSRTKE 443


>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 629

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 302 VKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLES-YETLKIKLALSKYMAMLSTLE 478
           VKCN+   V  I NS+    +T EL E     L  LE+  E LK ++  ++  A++    
Sbjct: 339 VKCNREEAVVHIENSEVLTSRTKELEE----KLEKLEAEKEELKSEVKCNREKAVVHVEN 394

Query: 479 MTQPLLEIF--RTKQ 517
                +E+   RTK+
Sbjct: 395 SLAAEIEVLTSRTKE 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,762,600
Number of Sequences: 28952
Number of extensions: 294124
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)