Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120214.Seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                        83   3e-16
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                        83   3e-16
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        83   3e-16

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
 Frame = +2

Query: 260 NPLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXX 433
           +P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD          
Sbjct: 100 DPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTH 159

Query: 434 XXXXXTATDVIHS*TIPSLGVKVDAI 511
                TA DVIHS  +P+L VK+DA+
Sbjct: 160 VRVLITAADVIHSFAVPALAVKMDAV 185



 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 32/37 (86%), Positives = 35/37 (94%)
 Frame = +1

Query: 511 PGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIE 621
           PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE
Sbjct: 186 PGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIE 222



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 31/83 (37%), Positives = 44/83 (53%)
 Frame = +3

Query: 6   LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 185
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 186 IIPAFTLIFIALPSLRLLYLLDE 254
           IIPA  LIFIA PSL+LLYL+DE
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDE 97


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
 Frame = +2

Query: 260 NPLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXX 433
           +P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD          
Sbjct: 100 DPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTH 159

Query: 434 XXXXXTATDVIHS*TIPSLGVKVDAI 511
                TA DVIHS  +P+L VK+DA+
Sbjct: 160 VRVLITAADVIHSFAVPALAVKMDAV 185



 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 32/37 (86%), Positives = 35/37 (94%)
 Frame = +1

Query: 511 PGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIE 621
           PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE
Sbjct: 186 PGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIE 222



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 31/83 (37%), Positives = 44/83 (53%)
 Frame = +3

Query: 6   LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 185
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 186 IIPAFTLIFIALPSLRLLYLLDE 254
           IIPA  LIFIA PSL+LLYL+DE
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDE 97


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
 Frame = +2

Query: 260 NPLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXX 433
           +P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD          
Sbjct: 100 DPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTH 159

Query: 434 XXXXXTATDVIHS*TIPSLGVKVDAI 511
                TA DVIHS  +P+L VK+DA+
Sbjct: 160 VRVLITAADVIHSFAVPALAVKMDAV 185



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 31/83 (37%), Positives = 44/83 (53%)
 Frame = +3

Query: 6   LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 185
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 186 IIPAFTLIFIALPSLRLLYLLDE 254
           IIPA  LIFIA PSL+LLYL+DE
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDE 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,185,886
Number of Sequences: 59808
Number of extensions: 208108
Number of successful extensions: 287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)