Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120213.Seq
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 0.84
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 4.5
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 27 4.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 4.5
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 26 5.9
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 26 5.9
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 5.9
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.9
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 26 7.8
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 0.84
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 221 HLRSVRFDFANACSFADQLLSTFIANNYLCYFY 319
HL DF C + + S F AN LCYFY
Sbjct: 332 HLLIRLCDFLKNCGYYELAWSIFQANMELCYFY 364
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 4.5
Identities = 22/100 (22%), Positives = 41/100 (41%)
Frame = +1
Query: 466 SSSKRHVDEQRQPNNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSE 645
S S + ++ + L N EL +V + +L+ +E K + T ++
Sbjct: 506 SKSNQEHKKEVEALQLQLVNSSTELESVKSENEKLKNELVLEIEKRK-----KYETNEAK 560
Query: 646 ITDSLPDLTLMLDKLAEQLLEAINTMQQTQRNELNNTNSF 765
IT DL+ + E + + +T+RN N N+F
Sbjct: 561 ITTVATDLSQYYRESKEYIASLYEKLDRTERNNKENENNF 600
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +1
Query: 403 AVTFIVSQARTATNIRRAGKNSSSKRH----VDEQRQPNNLNQTNQFLELSNVMTGVRNQ 570
A T + + T I R K + R+ +DE P N N+T Q +S+ + V
Sbjct: 182 ASTIVKGRTITLALISRRSKQRAGTRYFTRGLDENGNPANFNETEQITIVSDEKSEVTYS 241
Query: 571 NVQ 579
+VQ
Sbjct: 242 HVQ 244
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.5
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = +1
Query: 460 KNSSSKRHVDEQRQPNNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLL 639
K ++S ++ QP N N +FL N T RN ++ +E + + L
Sbjct: 192 KRTASYGKTHKRFQPQNKNLGKEFLPKKNNTTNSRNLRKTNISRIEYSSNKFLNHTRKRY 251
Query: 640 SEITDS-LPDLTLMLDKLAEQLLEAINTMQQTQR 738
+ + LPD + L + +A ++T R
Sbjct: 252 EMVLQAELPDFKCSIPCLIDTGTQANIITEETVR 285
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 80 RHGLH-LSKFKNAFASVSTTFVHHPI 154
R GL SKF AFAS+S+ F+H+ +
Sbjct: 39 RSGLSKFSKFVYAFASISSGFLHYQL 64
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 26.2 bits (55), Expect = 5.9
Identities = 21/100 (21%), Positives = 48/100 (48%)
Frame = +1
Query: 460 KNSSSKRHVDEQRQPNNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLL 639
K SS+ ++D NN+ +TN + S + +G RN+ L + T+ + T+ T
Sbjct: 557 KPSSTSSYIDTT---NNVLKTNSSFKSSGLTSGPRNEKELLPEGIPTSHNNSETQAQT-- 611
Query: 640 SEITDSLPDLTLMLDKLAEQLLEAINTMQQTQRNELNNTN 759
+++++ + + E+ E ++ ++ E+ N+N
Sbjct: 612 ADVSNIAASADGIYNSDQEKPPEKLDVTKRAFGREIENSN 651
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 777 LNWSKRVGVVQLVALRLLHRVDG 709
LNW KR G Q + + +HR+ G
Sbjct: 721 LNWPKRKGEKQYIDMFPIHRISG 743
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +1
Query: 607 DVILTRLNTLLSEITDSLPDLTLMLDKLAEQLL---EAINTMQQ-TQRNELNNTNSF*PI 774
D +LNT S +TD + L L ++ +++ E +N +Q+ + + +++++ F PI
Sbjct: 528 DKDFVKLNTTYSLLTDQVKTKQLALQEIESRVIRLEERLNMLQKLSMQPAISSSSEFVPI 587
Query: 775 *RRASQTSMV 804
S +++V
Sbjct: 588 ESHPSSSAVV 597
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -2
Query: 248 QNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 141
Q+ +G + +H ++DR++ ++ H + DGE
Sbjct: 336 QSASGAELFLHALYDRLVNEGVIVISHITQEGSDGE 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,376
Number of Sequences: 5004
Number of extensions: 61010
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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