Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120213.Seq
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    30   2.0  
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044...    30   2.7  
07_01_0244 + 1786009-1788048                                           29   3.6  
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    29   4.7  
03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956     29   4.7  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   4.7  

>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
            6272359-6272511,6273381-6273586,6274280-6274733,
            6276573-6276610,6276923-6277046,6277184-6277246,
            6277350-6277412,6277526-6278152,6278267-6278294,
            6278373-6278413,6278689-6278851,6278987-6279039,
            6279217-6279262,6279373-6279444,6279578-6279741,
            6279968-6280099,6280249-6280565,6280721-6280892,
            6281009-6281107,6281275-6281349,6281446-6281504,
            6281647-6281836,6281982-6282020
          Length = 1255

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 722  IVLMASNNCSANLSNMSVKSGNESVISESNVFN 624
            +V + SN CS    NMS+KS  E + ++SN F+
Sbjct: 944  VVCLGSNTCSNKTKNMSIKS--EHIYNKSNQFD 974


>01_06_1593 +
           38502884-38502993,38503580-38503665,38504352-38504497,
           38504817-38504933,38505028-38505144,38505858-38506001,
           38506099-38506251
          Length = 290

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 565 NQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQRNE 744
           N+ + +L   E   D+I TRLN  ++ + D L  +   +D   +Q L  +  +  T R E
Sbjct: 206 NEPLHVLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREE 265


>07_01_0244 + 1786009-1788048
          Length = 679

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 786 CSTLNWSKRVGVVQLVALRLLHRVDGFQQL 697
           C TL W +R+ V++ VA  LL+  D ++Q+
Sbjct: 456 CRTLGWPQRLHVIKCVAAGLLYLHDDWEQV 485


>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 186 GSCHNTVKYMVDIYGAS-VLILRTLARLPTS 275
           G CHN VK +  IYG + +L+L     LPT+
Sbjct: 546 GDCHNAVKLLSKIYGRNPLLLLAPDGPLPTA 576


>03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956
          Length = 397

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 325 TTVKVAQIIVCNKCAQQLVGKRASVRKIKTDAP*MSTMYLTV 200
           TTV++   + C  CAQQL  K   +R ++T    +ST  LTV
Sbjct: 152 TTVELLVNMHCEACAQQLHKKILKMRGVQTADTNLSTGKLTV 193


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -2

Query: 377 NEVCREENVISSVIVIGDDGKSSTNNCLQ*MCSATGRQTSKRSQNQNGRS 228
           ++ CR E   +  I    D  S   NC +  C   GR   K+    N RS
Sbjct: 561 SKACRGEEQKTQTIPKSSDNASLVENCKKESCPGKGRVQDKKKSVSNERS 610


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,735,032
Number of Sequences: 37544
Number of extensions: 398097
Number of successful extensions: 1155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)