Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120213.Seq
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)                    31   0.90 
SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)                   31   1.2  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_827| Best HMM Match : PAN (HMM E-Value=0.14)                        29   6.3  
SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 459

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 23/107 (21%), Positives = 44/107 (41%)
 Frame = +1

Query: 493 QRQPNNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLT 672
           Q+  N    TN   +++N  T + N   ++  +     D   T +    +++TD+  D+T
Sbjct: 242 QKTNNTTEITNGTTDMTNNTTEMTNNTTEITTSTTDMTDNT-TEMTNSTTDMTDNTTDVT 300

Query: 673 LMLDKLAEQLLEAINTMQQTQRNELNNTNSF*PI*RRASQTSMVRST 813
                +    +E  N+      N    TNS   +  +++ T M  ST
Sbjct: 301 NSTTDMTNSSIEMTNSTTDVTDNTTEMTNSTTDM--KSNTTEMTNST 345



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/108 (17%), Positives = 41/108 (37%)
 Frame = +1

Query: 439 TNIRRAGKNSSSKRHVDEQRQPNNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVIL 618
           T     G    +++H   Q       +TN   E++N  T + N   ++            
Sbjct: 217 TKSTTGGTRGINEKHGATQETNGTTQKTNNTTEITNGTTDMTNNTTEMTNNT-------- 268

Query: 619 TRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQRNELNNTNS 762
           T + T  +++TD+  ++T     + +   +  N+      + +  TNS
Sbjct: 269 TEITTSTTDMTDNTTEMTNSTTDMTDNTTDVTNSTTDMTNSSIEMTNS 316


>SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)
          Length = 628

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 30/120 (25%), Positives = 53/120 (44%)
 Frame = +1

Query: 361 SRQTSFAISVPV*IAVTFIVSQARTATNIRRAGKNSSSKRHVDEQRQPNNLNQTNQFLEL 540
           S+QT  ++ VP    VT     A+   ++    ++  +    +  RQ     Q  Q  ++
Sbjct: 223 SKQTG-SVPVPAKALVTRAEVNAKDLDSLIEMFEHFKADTASELMRQNYLQQQREQHRQM 281

Query: 541 SNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINT 720
              +     Q+  ++AA+E   D +LT+L   L+  T S   + L  D+L    LEA+ T
Sbjct: 282 MGGLKDDVTQHQDVVAAVEAYLDPVLTKLQPALNPETISDAVVLLADDQLLRLPLEALTT 341


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 565  NQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLA--EQLLEAINTMQQTQR 738
            N   +LL       DV  TRL  +LSE +DS   +  + + ++  EQ L   NT  Q   
Sbjct: 955  NLTEKLLKETTEKLDVAETRLEKVLSENSDSQSKIQRLQETVSHVEQRLTDSNTSDQNLI 1014

Query: 739  NELNN 753
            +ELN+
Sbjct: 1015 SELNS 1019


>SB_827| Best HMM Match : PAN (HMM E-Value=0.14)
          Length = 109

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 841 AKFSIAVSKLLSVPLMFVMLDAKLVKKSWCCSTRC 737
           AKF   +SK L VP+    +D+ LVK    CS RC
Sbjct: 28  AKFLKDLSKRLDVPI----IDSHLVKSEGLCSARC 58


>SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 149 DGEQKLLKRLQRHF*ILINVIRVDPKNRRVVEHNVIRRLHI 27
           D E+K L  L  H    +  ++ DP+NR+    N+ ++LH+
Sbjct: 181 DSEEKHLDELIEHAREELTSVKTDPENRKYPFVNLHKKLHL 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,960,587
Number of Sequences: 59808
Number of extensions: 474444
Number of successful extensions: 1307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)