Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120213.Seq
(852 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 33 0.34
Z48582-5|CAA88467.3| 377|Caenorhabditis elegans Hypothetical pr... 30 1.8
AC024791-20|AAO12400.1| 574|Caenorhabditis elegans Hypothetical... 29 4.2
AC024791-19|AAF60657.2| 618|Caenorhabditis elegans Hypothetical... 29 4.2
U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical pr... 28 7.3
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical pr... 28 9.7
U14635-5|AAN63442.1| 464|Caenorhabditis elegans Hypothetical pr... 28 9.7
U14635-4|AAL02446.1| 459|Caenorhabditis elegans Hypothetical pr... 28 9.7
U14635-3|AAN63441.1| 491|Caenorhabditis elegans Hypothetical pr... 28 9.7
U14635-2|AAC46656.2| 522|Caenorhabditis elegans Hypothetical pr... 28 9.7
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 32.7 bits (71), Expect = 0.34
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = -2
Query: 386 EIANEVCREENVISSVIVIGDDGKSSTNNCLQ*MCSATGRQTSKRSQNQNGRSVNVHHVF 207
EI + + +E+ VIS IV G T+ L + ++T S+N G ++V H F
Sbjct: 154 EIPSNIRKEQIVISDRIVSYCQGLEITSIILNDSDFSIVKETKYTSKNTGGHDIDVIHQF 213
Query: 206 DRVMTRSARIV 174
DR+ +V
Sbjct: 214 DRLSANGNYLV 224
>Z48582-5|CAA88467.3| 377|Caenorhabditis elegans Hypothetical
protein F27E5.5 protein.
Length = 377
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -2
Query: 467 EFFPARRIFVAVLAWETMNVTAI*TGTEIAN 375
E+ AR IFVAV+A MN+TA+ T ++ +
Sbjct: 184 EYSTARAIFVAVVAGAVMNITAVLTFRKVVS 214
>AC024791-20|AAO12400.1| 574|Caenorhabditis elegans Hypothetical
protein Y47G6A.5b protein.
Length = 574
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Frame = +1
Query: 526 QFLELSNVMTGVRNQNV-QLLAALETAKD-VILTRLNT------LLSEITDSLPDLTLML 681
QFLE + +T + +QNV LLA +T K +I+T T L ++T +LP + LM
Sbjct: 325 QFLEEAKTLTKLSHQNVIHLLAVCDTDKPYLIITEFMTNGSLLAWLQKLTKTLPPIPLMS 384
Query: 682 DK 687
++
Sbjct: 385 EE 386
>AC024791-19|AAF60657.2| 618|Caenorhabditis elegans Hypothetical
protein Y47G6A.5a protein.
Length = 618
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Frame = +1
Query: 526 QFLELSNVMTGVRNQNV-QLLAALETAKD-VILTRLNT------LLSEITDSLPDLTLML 681
QFLE + +T + +QNV LLA +T K +I+T T L ++T +LP + LM
Sbjct: 369 QFLEEAKTLTKLSHQNVIHLLAVCDTDKPYLIITEFMTNGSLLAWLQKLTKTLPPIPLMS 428
Query: 682 DK 687
++
Sbjct: 429 EE 430
>U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical
protein C25G6.5 protein.
Length = 455
Score = 28.3 bits (60), Expect = 7.3
Identities = 25/63 (39%), Positives = 32/63 (50%)
Frame = -2
Query: 302 NCLQ*MCSATGRQTSKRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGEQKLLKR 123
+CL MCSA N N R + H+FDRV RS R+V +F GEQ+ LK+
Sbjct: 311 HCLA-MCSACLNPLIYAFFNHNFR-IEFMHLFDRVGLRSLRVV----IF---GEQESLKK 361
Query: 122 LQR 114
R
Sbjct: 362 SMR 364
>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
protein C56E6.6 protein.
Length = 1102
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 200 HGQIHGGHLRSVRFDFANACSFADQLLSTFIANNYL 307
H ++G L + D C+ D L+ FIANNYL
Sbjct: 244 HLNLNGNKLNRIDGDVLKGCT--DTLVELFIANNYL 277
>Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical
protein F11F1.5 protein.
Length = 246
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 520 TNQFLELSNVMTGVRNQNVQ--LLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLA 693
T Q +EL + G VQ L A D ++++LN L+ + D L +L + L
Sbjct: 111 TQQIIELVKKIPGSALPRVQEILSNADNLGVDEVISKLNGLVPGLGDELNNLISTIFTLI 170
Query: 694 EQLLEAINTMQQT 732
+QLL + + Q+
Sbjct: 171 KQLLNEVADILQS 183
>Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical
protein F01G10.5 protein.
Length = 824
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 469 SSKRHVDEQRQPNNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEI 648
S K V +R +Q + ELSN++ ++ QLL LE ++ + L +
Sbjct: 252 SLKSDVTNKRDTAKSSQQRE-QELSNILEEKEKESAQLLQQLEESRAALRDEQRHLEHQE 310
Query: 649 TDS--LPDLTLMLDKLAEQLLEAINTMQQTQRNEL 747
++ + + + +L E+L + +Q NEL
Sbjct: 311 AENGKIVEQLKTVSELNEKLTMQVKDLQDASENEL 345
>U14635-5|AAN63442.1| 464|Caenorhabditis elegans Hypothetical
protein C27H5.2d protein.
Length = 464
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +1
Query: 445 IRRAGKNSSSKRHVDEQRQPNNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTR 624
+ A K RH + + N EL + V +N L A LET+ + I
Sbjct: 236 VSEALKRLEESRHTISELNRKSGNLEENVTELQMKLMNVEEENHGLKAQLETSHNRI-KE 294
Query: 625 LNTLLSEITDSLPDLTLMLDKL 690
++ +S +T S L+ LD+L
Sbjct: 295 MSDTISMLTSSKDILSKELDQL 316
>U14635-4|AAL02446.1| 459|Caenorhabditis elegans Hypothetical
protein C27H5.2b protein.
Length = 459
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +1
Query: 445 IRRAGKNSSSKRHVDEQRQPNNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTR 624
+ A K RH + + N EL + V +N L A LET+ + I
Sbjct: 236 VSEALKRLEESRHTISELNRKSGNLEENVTELQMKLMNVEEENHGLKAQLETSHNRI-KE 294
Query: 625 LNTLLSEITDSLPDLTLMLDKL 690
++ +S +T S L+ LD+L
Sbjct: 295 MSDTISMLTSSKDILSKELDQL 316
>U14635-3|AAN63441.1| 491|Caenorhabditis elegans Hypothetical
protein C27H5.2c protein.
Length = 491
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +1
Query: 445 IRRAGKNSSSKRHVDEQRQPNNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTR 624
+ A K RH + + N EL + V +N L A LET+ + I
Sbjct: 236 VSEALKRLEESRHTISELNRKSGNLEENVTELQMKLMNVEEENHGLKAQLETSHNRI-KE 294
Query: 625 LNTLLSEITDSLPDLTLMLDKL 690
++ +S +T S L+ LD+L
Sbjct: 295 MSDTISMLTSSKDILSKELDQL 316
>U14635-2|AAC46656.2| 522|Caenorhabditis elegans Hypothetical
protein C27H5.2a protein.
Length = 522
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +1
Query: 445 IRRAGKNSSSKRHVDEQRQPNNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTR 624
+ A K RH + + N EL + V +N L A LET+ + I
Sbjct: 236 VSEALKRLEESRHTISELNRKSGNLEENVTELQMKLMNVEEENHGLKAQLETSHNRI-KE 294
Query: 625 LNTLLSEITDSLPDLTLMLDKL 690
++ +S +T S L+ LD+L
Sbjct: 295 MSDTISMLTSSKDILSKELDQL 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,965,623
Number of Sequences: 27780
Number of extensions: 358766
Number of successful extensions: 1016
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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