Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120213.Seq
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    33   0.32 
At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger) fa...    30   1.7  
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    29   3.9  
At3g03360.1 68416.m00334 F-box family protein low similarity to ...    29   3.9  
At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family pr...    29   3.9  
At4g18240.1 68417.m02709 starch synthase-related protein contain...    28   6.9  
At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family pr...    28   9.1  

>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 20/75 (26%), Positives = 40/75 (53%)
 Frame = +1

Query: 505  NNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLD 684
            N   + ++  E +N++T   +   Q ++ L+  +D++L R N++ S++   L ++ L   
Sbjct: 1703 NGFERISRNEEATNLLTTKLSSFDQKISGLQYQEDLMLQRSNSMGSQLDILLKEIDLSNG 1762

Query: 685  KLAEQLLEAINTMQQ 729
             LAE LLE    + Q
Sbjct: 1763 DLAETLLEQERHLNQ 1777


>At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 362

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
 Frame = +1

Query: 283 HIYCKQLFVLLLPSSPITITLEITFSSRQTSFAISVPV*IAVTFIVSQARTATNIRRAGK 462
           +IYC Q   L+ P  P +  L+   SS  +SF+   P+ IA+  I++ A    +      
Sbjct: 23  NIYCPQWCYLIFPPPPPSFFLDDDSSSSSSSFS---PLLIALIGILTSALILVSYYTLIS 79

Query: 463 NSSSKRHVDEQRQPNNLNQTNQ--FLELSNVMTGVRNQNVQLLAALETAK 606
               + H     +  NLN   +  F     + T     N  ++ ++   K
Sbjct: 80  KYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYK 129


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 135  LLFTIPSKHRKMINDAG--GSCHNTVKYMVDIYGASVLI 245
            LL T PS   ++I +    G CHN +KY+  +Y   +++
Sbjct: 932  LLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970


>At3g03360.1 68416.m00334 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 481

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 289 YCKQLFVLLLPSSPITITLEITFSSRQTSFAISVP 393
           +CK+L VL L  SP  ITLEIT   R     +  P
Sbjct: 221 FCKKLKVLDLSKSPRLITLEITRRCRMEPTQLVAP 255


>At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family
           protein (bHLH125) contains Pfam profile: PF00010
           helix-loop-helix DNA-binding domain;  supporting cDNA
           gi|20805889|gb|AF506369.1|
          Length = 259

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = -2

Query: 419 TMNVTAI*TGTEIANEVC--REENVISSVI-VIGDDGKSSTNNCLQ*MCSATGRQTSKRS 249
           T+ VT    G EI    C  R ++ +SSV+ ++  + + S  +CL          T   S
Sbjct: 181 TVVVTPCLVGVEIIISCCLGRNKSCLSSVLQMLAQEQRFSVVSCLSARRQQRFMHTIV-S 239

Query: 248 QNQNGRSVNVHHVFDRVMT 192
           Q ++G+ +N+  + D++MT
Sbjct: 240 QVEDGKQINILELKDKIMT 258


>At4g18240.1 68417.m02709 starch synthase-related protein contains
           similarity to starch synthase GI:4582783 from [Vigna
           unguiculata]
          Length = 1040

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
 Frame = +1

Query: 538 LSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITD---SLPDLTLMLDKLAEQLLE 708
           L    +G+ +    L + L  +++ + ++L+TL  E TD    +  L L+LD+  +Q  +
Sbjct: 316 LEKECSGLESSVKDLESKLSVSQEDV-SQLSTLKIECTDLWAKVETLQLLLDRATKQAEQ 374

Query: 709 AINTMQQTQ--RNELN 750
           A+  +QQ Q  RN+++
Sbjct: 375 AVIVLQQNQDLRNKVD 390


>At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 782

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 25/128 (19%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
 Frame = +1

Query: 451 RAGKNSSSKRHVDEQRQPNNLNQTNQFLELSNVMTG------VRNQNVQLLAALETAKDV 612
           ++G  +    H+  ++  N L   ++  +L   +TG           + L+  L+  +D+
Sbjct: 48  KSGIQALCSLHIALEKAKNILQHCSECSKLYLAITGDAVLLKFEKAKIALIDGLKRVEDI 107

Query: 613 ILTRLNTLLSEITDSLPDLTLMLDKLAEQL-LEAINTMQQTQRNELNNTNSF*PI*RRAS 789
           + + + + + EI   L +   MLD   +++  + I  +QQ ++ +  N N+   I  RA+
Sbjct: 108 VPSSIGSQILEIVGELENTRFMLDPSEKEVGDQIIALLQQGKKFDNCNDNTELEIFHRAA 167

Query: 790 QTSMVRST 813
               + S+
Sbjct: 168 TRLSITSS 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,551,276
Number of Sequences: 28952
Number of extensions: 319767
Number of successful extensions: 973
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)