Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120211.Seq
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   2.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.2  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   6.2  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 206 LFSFSDNLKVTRQKY 250
           +FS++DN+  TR KY
Sbjct: 13  MFSYTDNVSSTRTKY 27


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 249 YFWRVTFRLSLKLKSCLIFFF*FHEPFPTIFVI 151
           Y+  + F + L L  C+ +F+  H  F   F+I
Sbjct: 242 YYAFILFTVHLLLLVCIYYFYYMHLLFCCAFII 274


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GT+
Sbjct: 85  LWKPDVLMYNSADEGFDGTF 104


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GT+
Sbjct: 85  LWKPDVLMYNSADEGFDGTF 104


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GT+
Sbjct: 85  LWKPDVLMYNSADEGFDGTF 104


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GT+
Sbjct: 85  LWKPDVLMYNSADEGFDGTF 104


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GT+
Sbjct: 85  LWKPDVLMYNSADEGFDGTF 104


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 481 KNCGLGHFCTDGLNYN 434
           KNC   + C  GL+Y+
Sbjct: 570 KNCAAYYVCRSGLSYH 585


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 94  CCDNHFNM 117
           CCDN+FN+
Sbjct: 162 CCDNNFNV 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,089
Number of Sequences: 336
Number of extensions: 3273
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)