Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120211.Seq
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.34 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 324 HVLWRSNGLVYN*NDDQISGTY 259
           H LW+ + L+YN  D+   GTY
Sbjct: 103 HRLWKPDVLMYNSADEGFDGTY 124


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 181 PRTISNNIRYLVTVRFPRHYSPY*NDYHNTDY 86
           P+ ISNN        +  +Y+ Y N+Y NT+Y
Sbjct: 79  PKIISNNNSLSNNYNYNNNYNNYNNNY-NTNY 109


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GTY
Sbjct: 68  LWKPDILMYNSADEGFDGTY 87


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GTY
Sbjct: 68  LWKPDILMYNSADEGFDGTY 87


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GTY
Sbjct: 68  LWKPDILMYNSADEGFDGTY 87


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GTY
Sbjct: 68  LWKPDILMYNSADEGFDGTY 87


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GTY
Sbjct: 68  LWKPDILMYNSADEGFDGTY 87


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GTY
Sbjct: 68  LWKPDILMYNSADEGFDGTY 87


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GTY
Sbjct: 136 LWKPDILMYNSADEGFDGTY 155


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 LWRSNGLVYN*NDDQISGTY 259
           LW+ + L+YN  D+   GTY
Sbjct: 136 LWKPDILMYNSADEGFDGTY 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,057
Number of Sequences: 438
Number of extensions: 4160
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)