Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120210.Seq
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 31 0.22
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.90
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 27 2.1
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 2.8
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 27 3.6
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 26 4.8
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 4.8
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 26 6.4
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 6.4
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.4
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 6.4
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 6.4
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.4
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 602 FMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETL 721
F G P +E+C ++ K ++G+D L A KA E+L
Sbjct: 91 FTGVPTWEEYCTQMTKCNEKVGIDSSLITFPAAKALRESL 130
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.90
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 457 SPEGHNLQESESMTSANTMLPSVSTPNSIFMSISAQS 347
SP +L S S TS+ S S+P+SI SIS+ S
Sbjct: 586 SPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSS 622
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 479 TGVPEPHNGDAADLDTVKRNFAWVKDQLDFLKPTIHHKVV 598
T +P P N ++LD V F +K FL + H KV+
Sbjct: 194 TDIPVPSNLSISNLDVVSVEFKRLKRNSIFLINSFHSKVI 233
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 472 TINLLSPEGHNLQESESMTSANTMLPSVSTPNSIFMS 362
TI PEG N ++ +AN M+PS+ PNS S
Sbjct: 550 TIANSRPEG-NSGSAKKAAAANPMIPSIVLPNSAMPS 585
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 579 VGFKKSSWSFTQAKLRLTVSRSAASPL*GSGTPVCQPLIFYHRKATISKSQN 424
+G KSS S ++ +V R+A+S + +GT V P T++ + N
Sbjct: 682 LGRSKSSKSLQTDFMKASVERAASSRVFSTGTSVTSPQALSKTNNTVNNAAN 733
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 419 DIRQYNATFCIDSEFYFHVNKCAVTQSPS 333
D++ N CID + H+ A T SP+
Sbjct: 214 DLKPENVLICIDQDALQHIEAPATTSSPT 242
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 408 LADVIDSDSWRLWP 449
L ++DSD+WR WP
Sbjct: 106 LKHLVDSDTWRRWP 119
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 643 YFLTMFLVGW*THKDDNFVVDRRLQEIKLVFHPSKVAFDC 524
YF +L+ W H + V RL + + HP V + C
Sbjct: 189 YFALSWLITWFAHDVSDISVVCRLFDFFISSHPLTVVYTC 228
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -1
Query: 442 NLQESESMTSANTMLPSVSTPNSIFMSISAQSRRAQAFSKI 320
++QE+ SMT + +LPS S+ + QSRRA SK+
Sbjct: 128 HVQEAASMTQLSHLLPS-----SLINLSNGQSRRAMLASKL 163
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 445 HNLQESESMTSANTMLPSVSTPNSIFMSISAQSRRA 338
HN SE+++++N+ +PS++ S M S A
Sbjct: 17 HNAWGSENISNSNSAIPSITNDVSFSMEASVWKENA 52
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 597 TTLWWIVGFKKSSWSFTQAKL 535
TT +I+ FKK+SW F + K+
Sbjct: 514 TTEEYIINFKKNSWLFFRKKI 534
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 595 NFVVDRRLQEIKLVFHPSKVAFDCV*ISC 509
N +V L + + VFH +K FDC+ SC
Sbjct: 582 NVLVHMILTQFRDVFHLTKQRFDCLKNSC 610
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 123 ERASCKAAGNPFNGDHLTF 67
+R + K GN F GDH F
Sbjct: 21 KRRASKVVGNSFGGDHFNF 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,447
Number of Sequences: 5004
Number of extensions: 66180
Number of successful extensions: 209
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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