Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120210.Seq
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889...    32   0.41 
11_08_0083 + 28256844-28258760                                         32   0.54 
08_01_0979 + 9847008-9847093,9848148-9848682                           31   0.94 
02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638...    28   6.6  
11_03_0039 - 9145639-9146378,9149199-9149538                           28   8.8  
10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...    28   8.8  
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38...    28   8.8  

>09_04_0447 +
           17688248-17688319,17688414-17688515,17688852-17688981,
           17689198-17689290,17689363-17689451,17689889-17689969,
           17690118-17690207,17690653-17690772,17690877-17690927,
           17691125-17691171,17691321-17691378,17691451-17691507
          Length = 329

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +3

Query: 210 SPMVRGANHFSQIQ----LNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIE 377
           +P  + A+H   +     +N  L+ +++ D  R   + +F   ++        L+D K E
Sbjct: 146 TPTTKAADHDVPVTPEEIINSGLMSKEDFDEARSKALSLFAYGQEVALENGLILVDTKYE 205

Query: 378 FGVDTEGSIVLAD 416
           FG   +G+I+L D
Sbjct: 206 FGKTADGTIMLID 218



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 25  AFVKIASETAFLSKKCEMIPIEWVTRRLATGS 120
           A V    +   ++K+C + P+E+V R   TGS
Sbjct: 78  AVVSSPDKNVTIAKRCSVFPVEFVVRGYVTGS 109


>11_08_0083 + 28256844-28258760
          Length = 638

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 85  IEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETFFKDDANHDPQWSEEQII 237
           IE   RRL   S   R  GVP  FR    K ET  ++D + DP+  EE+++
Sbjct: 413 IEETGRRL---SICARQFGVPFKFRAIAAKWETVRREDLHLDPEEEEEEVL 460


>08_01_0979 + 9847008-9847093,9848148-9848682
          Length = 206

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 20/83 (24%), Positives = 37/83 (44%)
 Frame = +2

Query: 485 VPEPHNGDAADLDTVKRNFAWVKDQLDFLKPTIHHKVVVFMGSPADQEHCQKIAKAAREL 664
           V  P N     ++ +  +   V+D++D  +   H +  V MGS     + + + KAA+E+
Sbjct: 115 VEGPENVVPTQVEDMVHDDGSVEDKIDLEEMLRHAEPRVLMGSARGLNNFEALQKAAKEV 174

Query: 665 GLDVDLRVTSAHKATEETLRIMQ 733
             D      S  K  +  L +M+
Sbjct: 175 LYDESKSCDSEFKTLQSVLELMR 197


>02_04_0113 -
           19861904-19862197,19862338-19862496,19862580-19863833,
           19864086-19864124
          Length = 581

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 521 DTVKRNFAWVKDQLDFLKPTIHHKVVV 601
           +  +R   W +DQ +  +PT+HH V V
Sbjct: 490 EAYRRKTIWDQDQTEIEEPTLHHLVTV 516


>11_03_0039 - 9145639-9146378,9149199-9149538
          Length = 359

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 127 KRNPGVPEGF---RFTPPKQETFFKDDANHDPQWSEEQIISAKFN*T 258
           KRNP VP+G+       P  ET   D   +  +++ + +  AKFN T
Sbjct: 202 KRNPPVPQGYYGCGLVLPVAETLVADLCGNPLEYAVQLVRKAKFNVT 248


>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 581 IHHKVVVFMGSPADQEHCQKIAKAARELGLDVDL 682
           +  ++VVF+GSP   E  + I K  ++  + +D+
Sbjct: 108 LSQRIVVFVGSPVKDEKLETIGKKLKKYNVSLDV 141


>05_01_0054 +
           379974-380215,380343-380556,381603-381892,382384-382560,
           382705-383481,383572-383645,383757-383819,383919-384007,
           384106-384201,384319-384978,385613-385687,386422-386492,
           386578-386635,386900-387104,387379-387869
          Length = 1193

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 601 LYGFTSRPRTLSENS*SCP*TWTGCRPSR 687
           L G T+R R++  N+ S P  W G RP +
Sbjct: 367 LGGMTNRKRSIHSNASSPPIAWVGQRPQK 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,822,381
Number of Sequences: 37544
Number of extensions: 456309
Number of successful extensions: 1036
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)