Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120210.Seq
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)                121   7e-28
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)          121   7e-28
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_19442| Best HMM Match : Beach (HMM E-Value=0)                       28   9.0  
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)               28   9.0  
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)              28   9.0  

>SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)
          Length = 278

 Score =  121 bits (291), Expect = 7e-28
 Identities = 55/88 (62%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
 Frame = +3

Query: 249 QLNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEFGVDTE-GSIVLADVID 425
           ++ G  IG+ E+D M ++ I IFEI+E+AWA  D AL+DMKIEFGV+ + G ++LADV+D
Sbjct: 149 EIGGRKIGKHELDIMSESAIAIFEIIERAWATVDVALVDMKIEFGVNRKTGELMLADVVD 208

Query: 426 SDSWRLWPSGDKRLMVDKQVYRNLTTVT 509
           +DSWR+WPSGDKRLM DKQVYRNL  VT
Sbjct: 209 NDSWRIWPSGDKRLMRDKQVYRNLPEVT 236



 Score =  111 bits (267), Expect = 6e-25
 Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
 Frame = +1

Query: 1   LKSAGIKTAFVKIASET--AFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPK 174
           LK+ G+KT FVK       AF+   CEMIP+E V RR+ATGSFLKR PGV EG+RFTPPK
Sbjct: 64  LKACGLKTHFVKRCESDPEAFIGIACEMIPLEVVCRRIATGSFLKRYPGVKEGYRFTPPK 123

Query: 175 QETFFKDDANHDPQWSEEQIISAKF 249
           QE F KDDA HDP W+ EQ + A F
Sbjct: 124 QEFFLKDDAQHDPFWTYEQCVEAAF 148



 Score = 35.5 bits (78), Expect = 0.045
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 518 LDTVKRNFAWVKDQLDFLKPTIHHKVVVFMGSPADQEH 631
           L+ VK+N+AWV  +   L       VVVFMGS +D +H
Sbjct: 240 LEQVKKNYAWVAGESQKLNKHNPGHVVVFMGSASDIDH 277


>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
          Length = 265

 Score =  121 bits (291), Expect = 7e-28
 Identities = 55/88 (62%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
 Frame = +3

Query: 249 QLNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEFGVDTE-GSIVLADVID 425
           ++ G  IG+ E+D M ++ I IFEI+E+AWA  D AL+DMKIEFGV+ + G ++LADV+D
Sbjct: 59  EIGGRKIGKHELDIMSESAIAIFEIIERAWATVDVALVDMKIEFGVNRKTGELMLADVVD 118

Query: 426 SDSWRLWPSGDKRLMVDKQVYRNLTTVT 509
           +DSWR+WPSGDKRLM DKQVYRNL  VT
Sbjct: 119 NDSWRIWPSGDKRLMRDKQVYRNLPEVT 146



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 41/58 (70%), Positives = 46/58 (79%)
 Frame = +1

Query: 76  MIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETFFKDDANHDPQWSEEQIISAKF 249
           MIP+E V RR+ATGSFLKR PGV EG+RFTPPKQE F KDDA HDP W+ EQ + A F
Sbjct: 1   MIPLEVVCRRIATGSFLKRYPGVKEGYRFTPPKQEFFLKDDAQHDPFWTYEQCVEAAF 58



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/72 (44%), Positives = 48/72 (66%)
 Frame = +2

Query: 518 LDTVKRNFAWVKDQLDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSA 697
           L+ VK+N+AWV  +   L       VVVFMGS +D +HC+KI  A +   +  DLRV+SA
Sbjct: 150 LEQVKKNYAWVAGESQKLNKHNPGHVVVFMGSASDIDHCKKIEAALKSFNVPCDLRVSSA 209

Query: 698 HKATEETLRIMQ 733
           HK +E+TL++++
Sbjct: 210 HKGSEDTLKVLR 221


>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 464 SFITGRPQSPRVRIDDIRQYNATFCIDSEFYFHVNKCAVTQSPSFLQ 324
           S++TGR Q   V+IDD     A +  D+ FY H   C ++     LQ
Sbjct: 741 SYLTGRKQF--VQIDDKSSRLADYADDTTFYAHAKPCDISDCERCLQ 785


>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
          Length = 796

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 324 LEKAWALRDCALIDMKIEFGVDTEGSIVLADVIDSDSWRLWP 449
           +++AW   +    D+K  FGVD +G ++  D ++  SW   P
Sbjct: 111 VQRAWQNCNRDTSDVKFTFGVDDDGMVI--DDVELPSWANTP 150


>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
          Length = 491

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 424 SMTSANTMLPSVSTPNSIFMSISAQ 350
           S+TS   M+P V  P +++MS++A+
Sbjct: 183 SLTSGGAMMPVVVLPTNVYMSLAAK 207


>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
          Length = 1171

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 481 CLSTINLLSPEGHNLQESE 425
           CLS +N  SP GH L+++E
Sbjct: 133 CLSLVNYYSPYGHRLRDTE 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,582,378
Number of Sequences: 59808
Number of extensions: 524740
Number of successful extensions: 1208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)