Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120210.Seq
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical pr...   122   3e-28
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z81506-4|CAB04131.1|  191|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    29   3.4  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        29   3.4  
AF016436-2|AAC25898.1|  406|Caenorhabditis elegans Hypothetical ...    29   3.4  

>U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical
           protein B0286.3 protein.
          Length = 423

 Score =  122 bits (294), Expect = 3e-28
 Identities = 55/80 (68%), Positives = 64/80 (80%)
 Frame = +1

Query: 1   LKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPEGFRFTPPKQE 180
           L+  G+ T F K  SET F+++KC MIPIEWV RR+ATGSFLKRNPGV EGFRF   K E
Sbjct: 72  LQLLGLPTHFEKSISETEFVARKCTMIPIEWVARRVATGSFLKRNPGVKEGFRFNDLKLE 131

Query: 181 TFFKDDANHDPQWSEEQIIS 240
           TFFKDDAN DPQW++EQI+S
Sbjct: 132 TFFKDDANDDPQWTDEQIVS 151



 Score =  120 bits (290), Expect = 8e-28
 Identities = 53/89 (59%), Positives = 69/89 (77%)
 Frame = +3

Query: 246 IQLNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEFGVDTEGSIVLADVID 425
           + ++ L IGR+E+  M+K T L+F  LEK WAL + ALIDMKIEFGV  EG I+LADVID
Sbjct: 154 LMIDHLKIGREEISLMKKMTKLVFRALEKGWALSNSALIDMKIEFGVTVEGEILLADVID 213

Query: 426 SDSWRLWPSGDKRLMVDKQVYRNLTTVTQ 512
           +DSWR+WP  D+RL +DKQVYR++  VT+
Sbjct: 214 NDSWRVWPENDRRLQLDKQVYRDMKEVTE 242



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +2

Query: 518 LDTVKRNFAWVKD-QLDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTS 694
           L  V +N+  V D    F K      V+V MGS +D    +KI+  A++ GL+  L+V+S
Sbjct: 245 LALVLKNYTKVMDITATFSKHQQKCHVLVIMGSGSDGVFARKISDEAKKFGLETTLKVSS 304

Query: 695 AHKATEETLRIM 730
           AHK T +TL ++
Sbjct: 305 AHKTTSDTLEVI 316


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -1

Query: 478  LSTINLLSPEGHNLQESESMTSANTMLPSVSTPNSIFMSISAQSRRAQAFSKISNIRIVA 299
            LS    ++P+ +  Q        +T  P + TP++   S +A +  ++    +S  +I A
Sbjct: 3300 LSPFGKVTPKKNTAQTQSLTVLESTSSPELLTPSNPETSNTASTSSSKQPKSLSEEKITA 3359

Query: 298  FLM*STSSRPIRR 260
              M  T  RPIR+
Sbjct: 3360 TQMIQTRGRPIRK 3372


>Z81506-4|CAB04131.1|  191|Caenorhabditis elegans Hypothetical
           protein F16H6.5 protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 503 GDAADLDTVKRNFAWVKDQLDFLKPTIHHKVVVFMGSPA 619
           GD AD+ T+  NF   +  + ++    H  V VF GSPA
Sbjct: 9   GDIADMLTMCNNFPGFEAPMRYMIENSHDVVTVFDGSPA 47


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 76   MIPIEWVTRRLATGSFLKRNPGVPE 150
            M+P++W +R  A+ S   R+PG PE
Sbjct: 1278 MVPLDWWSRYYASMSQFHRSPGYPE 1302


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 76   MIPIEWVTRRLATGSFLKRNPGVPE 150
            M+P++W +R  A+ S   R+PG PE
Sbjct: 1278 MVPLDWWSRYYASMSQFHRSPGYPE 1302


>AF016436-2|AAC25898.1|  406|Caenorhabditis elegans Hypothetical
           protein F38H12.3 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 489 GTPVCQPLIFYHRKATISKSQNR*HPPIQCYLLYRLRILFSCQ*VRSHAEPKLSP 325
           G P C   I + R+A I+KSQ +      C + +  R +  C  +R  +   + P
Sbjct: 46  GAPACLGCIVFFRRAVINKSQYKCWKKGNCVITFASRCVCRCCRLRKCSHVGMKP 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,395,835
Number of Sequences: 27780
Number of extensions: 385423
Number of successful extensions: 947
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)