Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120210.Seq
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21110.1 68416.m02668 phosphoribosylamidoimidazole-succinocar...    39   0.003
At3g58400.1 68416.m06509 meprin and TRAF homology domain-contain...    28   7.3  
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof...    27   9.7  
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat...    27   9.7  

>At3g21110.1 68416.m02668
           phosphoribosylamidoimidazole-succinocarboxamide synthase
           / SAICAR synthetase (PUR7) identical to
           phosphoribosylamidoimidazole-succinocarboxamide
           synthase, chloroplast [precursor] SP:P38025 from
           [Arabidopsis thaliana]
          Length = 411

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +3

Query: 210 SPMVRGANHFSQIQLNGLLIG----RDEVDYMRKATILIFEILEKAWALRDCALIDMKIE 377
           +P  + A+H   I  N ++ G    + E D      + +FE  +         L+D K E
Sbjct: 235 TPTTKAADHDVPISPNEIVEGGFMTQAEFDEASMKALSLFEFGQGVAKKHGLILVDTKYE 294

Query: 378 FGVDTEGSIVLADVIDS-DSWRLWPSG 455
           FG  ++GSI+L D I + DS R W +G
Sbjct: 295 FGRSSDGSILLIDEIHTPDSSRYWLAG 321



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 25  AFVKIASETAFLSKKCEMIPIEWVTRRLATGS 120
           A V        ++KKC + PIE+V R   TGS
Sbjct: 167 AIVSSPDRNVVIAKKCSVFPIEFVVRGYVTGS 198


>At3g58400.1 68416.m06509 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam PF00917: MATH domain
          Length = 316

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 SGSLLQNKRRSSRMTQTTIPNGQRSKSFQPNSIK 256
           +GSL    RR +R T T + N    KSFQPN ++
Sbjct: 78  NGSLPFGWRRHARYTLTLV-NQNSKKSFQPNEVQ 110


>At4g38870.1 68417.m05504 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 426

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 149 KASGSLLQNKRRSSRMTQTTIPNGQRSKSFQPNSIK 256
           K  G   + K  + R TQ  +P G RS SF P++++
Sbjct: 2   KTLGFSPKQKFCARRQTQRWLPEGDRSSSFTPSTME 37


>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
            similar to CLIP-associating protein CLASP2 (GI:13508651)
            [Rattus norvegicus]
          Length = 1439

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 420  IDSDSWRLWPSGDKRLMVDKQVYRNLTTVTQ 512
            IDSDS R W S  +  M+   V +N+++ TQ
Sbjct: 1073 IDSDSGRKWSSSQEPTMITGGVGQNVSSGTQ 1103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,999
Number of Sequences: 28952
Number of extensions: 360372
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)