Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120209.Seq
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       28   1.5  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   2.0  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   2.0  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    26   6.2  

>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 278 TKNNSVSKPSRLGNVMFVNSLIDKPITRETIVDIINSYHNACQNLKR 418
           +KNN   KP+    + F+N+   +    +++ + IN Y + C  + R
Sbjct: 137 SKNNGFHKPTDKIKIPFINNTAHESDLHDSLQEAINLYPDTCAVIVR 183


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 356 TRETIVDIINSYHNACQNLKRSGHRVVGDYRAYERDYKLAALDFIIL 496
           T   IV +I  Y+N  + + + G++  G + AY   +    +DF+ L
Sbjct: 268 TSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAYLEPWHADVMDFLEL 314


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 295 YRIVFCLFKFVQIKTLIDWSSGSVSLYKQNGKAFNSTNDEHIKVCW--LLTSWGCKRLFI 122
           + IVF L  F     L +W++ SV    Q    F      +  V W  ++TSW C  L++
Sbjct: 369 FHIVFVLAAFYTASLLTNWNTTSV-YENQKNDVFVRIGFSYAAV-WVKIITSWVCHGLYV 426


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 270 LNRQKTIRYLNRRAWAT*CLLTV*STN 350
           L R KT+ YLN++ W T   L + S N
Sbjct: 694 LRRGKTVSYLNQKLWLTAASLFLKSGN 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,289
Number of Sequences: 5004
Number of extensions: 59991
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)