Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120209.Seq
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0498 + 16574250-16574312,16576576-16577457,16578624-165787...    33   0.30 
06_03_0253 + 18753901-18754278,18754873-18754968,18755167-187553...    30   2.1  
07_01_1124 + 10392909-10392974,10393037-10393455,10393503-103936...    28   6.5  
02_04_0391 + 22576839-22577387                                         28   6.5  
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157...    28   8.6  
05_03_0418 + 13700855-13700942,13701602-13701728,13701845-137019...    28   8.6  

>04_03_0498 +
           16574250-16574312,16576576-16577457,16578624-16578714,
           16578802-16578857,16579527-16579640
          Length = 401

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 21/42 (50%), Positives = 23/42 (54%)
 Frame = +2

Query: 272 EQTKNNSVSKPSRLGNVMFVNSLIDKPITRETIVDIINSYHN 397
           E T N  VSK SRL  V   NSL D    RE   D+I+S HN
Sbjct: 210 ENTPNAHVSKRSRLHRVSPANSLFD----REACDDLIDSAHN 247


>06_03_0253 +
           18753901-18754278,18754873-18754968,18755167-18755376,
           18756028-18756093,18756379-18756576,18756616-18756810,
           18756968-18757014,18757147-18757234,18757331-18757681,
           18758593-18759123
          Length = 719

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 266 KFEQTKNNSVSKPSRLGNVMFVNSLIDKPITRETIVD-IINSYHNACQ 406
           + EQ     V K   LGN+ F+ +L+ K +    I+D I+ +  + C+
Sbjct: 503 EMEQRDKERVVKLETLGNINFIRALLKKKLITNKIIDHIVQAVMDCCK 550


>07_01_1124 +
           10392909-10392974,10393037-10393455,10393503-10393657,
           10393792-10394247,10394379-10395298
          Length = 671

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 51  SITIEIVDKDKFENKHSDIEVCYVMNNRLHPQD-VNSQQTLMCSSFVELNAL-PFCLYNE 224
           +I+ +++D D+ E   +D+  C V    + P    N    L+C    E++ L P  L+N 
Sbjct: 486 AISQKVIDPDRLEALQNDVLQCLVSFELIFPPSFFNIMTHLLCHLVKEISILGPVYLHN- 544

Query: 225 TLPDDQSMSVL 257
             P ++ M V+
Sbjct: 545 MFPFERYMGVM 555


>02_04_0391 + 22576839-22577387
          Length = 182

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 9   ENIQMNLQNKLKPRSITIEIVDKDKFENKHSDIEVCYVMNNRLHPQDVNSQQTLM 173
           EN+     NK +P   T ++  K   + KH +I+    +   + P + + QQ L+
Sbjct: 23  ENVAAESFNKQEPEQPTNKLATKSFNKQKHVEIQPTNKLEQLIQPTNEHEQQQLL 77


>08_01_0189 +
           1578935-1578950,1579227-1579390,1579493-1579605,
           1579850-1580399,1580514-1580813,1581093-1581133,
           1581359-1581606,1581983-1582086,1582177-1582323
          Length = 560

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 481 RFYYFDARHRITHRTLKYNMLNIHE-KMFQELKTIVCKHSAAKLYDILINYDINKEPLNN 657
           +FY  D ++R++ + L++  LNIH  + F + + I  + + ++   +  ++ I KE L +
Sbjct: 278 KFYVGDNQNRLSGQALEFKQLNIHAWEAFDKGQDIHMQAAPSQAELLFKSFKIKKEKLKS 337


>05_03_0418 +
           13700855-13700942,13701602-13701728,13701845-13701916,
           13702079-13702153,13702290-13702361,13702477-13702638,
           13702726-13702800,13702880-13702951,13703040-13703108,
           13703196-13703264,13703355-13703429,13703522-13703593,
           13703668-13703737,13703920-13704361,13704442-13704573,
           13704664-13704803,13704910-13705129,13705301-13705536,
           13705732-13706256
          Length = 930

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 613 DILINYDINKEPLNNFRYNYEVL*SCF 693
           D  +N DI   P+N  R+NY  + +CF
Sbjct: 459 DAYLNVDIRACPVNQKRFNYSQVLNCF 485


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,148,713
Number of Sequences: 37544
Number of extensions: 325947
Number of successful extensions: 703
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)