BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120209.Seq (719 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59) 31 0.94 SB_21312| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_46458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8 SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3) 28 6.6 SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6 SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8 SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25) 28 8.8 SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031) 28 8.8 >SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59) Length = 218 Score = 31.1 bits (67), Expect = 0.94 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -2 Query: 667 CIENCSRALC*CRN*LICRTVWRRCVCTQSFLILETFFRVCLACCISKCDV*C 509 C+ C C + CR + RCV + + F C+ACC+ +C C Sbjct: 71 CVMRC--VACRVMRCVACRVM--RCVACRVMCCVACFVMHCVACCVMRCVACC 119 Score = 28.3 bits (60), Expect = 6.6 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -2 Query: 616 CRTVWRRCVCTQSFLILETFFRVCLACCISKCDV*C 509 CR + RCV + + F C+ACC+ +C C Sbjct: 14 CRVM--RCVGCRVMCCVACFVMHCVACCVMRCVACC 47 >SB_21312| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 512 Score = 30.7 bits (66), Expect = 1.2 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = -2 Query: 223 SLYKQNGKAFNSTNDEHIKVCWLLTSWGCKRLFIT*HTSMSECLFSN-LSLSTISMVIER 47 ++ K G AF S N H + + C+R F H + CL N S+ + S V +R Sbjct: 331 AIEKGTGDAFTSANFRHRHIKPVAVITNCRRRFFPGHCELKTCLVINERSMRSGSPVHDR 390 Query: 46 G 44 G Sbjct: 391 G 391 >SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 664 Score = 30.3 bits (65), Expect = 1.6 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +2 Query: 362 ETIVDIINSYHNACQNLK 415 E I+DI+ +HNACQN K Sbjct: 411 ENIIDILRKHHNACQNDK 428 >SB_46458| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 761 Score = 29.1 bits (62), Expect = 3.8 Identities = 12/49 (24%), Positives = 25/49 (51%) Frame = +1 Query: 508 RITHRTLKYNMLNIHEKMFQELKTIVCKHSAAKLYDILINYDINKEPLN 654 R+T++ +N L H++ F+++K ++ K YD+ I + N Sbjct: 169 RLTYKDAVFNWLPQHQETFEKIKMMITKAPLLHYYDVNKEVTIESDSSN 217 >SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3) Length = 138 Score = 28.3 bits (60), Expect = 6.6 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -2 Query: 616 CRTVWRRCVCTQSFLILETFFRVCLACCISKCDV*C 509 CR + RCV + + F C+ACC+ +C C Sbjct: 6 CRVM--RCVGCRVMCCVACFVMHCVACCVMRCVACC 39 >SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1576 Score = 28.3 bits (60), Expect = 6.6 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 607 VWRRCVCTQSFLIL 566 +W CVCT+SFL+L Sbjct: 1373 IWAACVCTKSFLLL 1386 >SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 231 Score = 27.9 bits (59), Expect = 8.8 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = +2 Query: 236 RPVYERFNLYKFEQTKNNSVSKPSRLGNVMFVNSLIDKPITRETIVDIINSYHNACQNLK 415 R Y RF Y + + + +PSR+ F+ L +K +V YH C+N+ Sbjct: 82 RSRYSRFVYYNYRHVRCSRSREPSRIPK-RFLRRLHNKSRKLRWVV-----YHRICRNIP 135 Query: 416 RSGH 427 RS + Sbjct: 136 RSSN 139 >SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25) Length = 941 Score = 27.9 bits (59), Expect = 8.8 Identities = 12/44 (27%), Positives = 27/44 (61%) Frame = +1 Query: 505 HRITHRTLKYNMLNIHEKMFQELKTIVCKHSAAKLYDILINYDI 636 H+ T RT K + + + + + ++ +C + AKLY++L +Y++ Sbjct: 91 HQHTRRTHKAGL--VVKTLRETMRAEMCTQAFAKLYEVLASYNV 132 >SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031) Length = 563 Score = 27.9 bits (59), Expect = 8.8 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = -2 Query: 658 NCSRALC*CRN*LICRTVWRRCVCTQSFLILETFFRVCLACCISKCDV*C 509 +C LC ++CR V R V ++ L L RV L +S C V C Sbjct: 375 SCCAVLCRA---VLCRAVSCRAVLCRAVLCLAVLCRVVLCRAVSCCTVWC 421 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,475,706 Number of Sequences: 59808 Number of extensions: 441236 Number of successful extensions: 1118 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1115 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1913853903 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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