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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120209.Seq
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)                     31   0.94 
SB_21312| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_46458| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)                      28   6.6  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)                  28   8.8  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               28   8.8  

>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
          Length = 218

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 667 CIENCSRALC*CRN*LICRTVWRRCVCTQSFLILETFFRVCLACCISKCDV*C 509
           C+  C    C     + CR +  RCV  +    +  F   C+ACC+ +C   C
Sbjct: 71  CVMRC--VACRVMRCVACRVM--RCVACRVMCCVACFVMHCVACCVMRCVACC 119



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 616 CRTVWRRCVCTQSFLILETFFRVCLACCISKCDV*C 509
           CR +  RCV  +    +  F   C+ACC+ +C   C
Sbjct: 14  CRVM--RCVGCRVMCCVACFVMHCVACCVMRCVACC 47


>SB_21312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 512

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 223 SLYKQNGKAFNSTNDEHIKVCWLLTSWGCKRLFIT*HTSMSECLFSN-LSLSTISMVIER 47
           ++ K  G AF S N  H  +  +     C+R F   H  +  CL  N  S+ + S V +R
Sbjct: 331 AIEKGTGDAFTSANFRHRHIKPVAVITNCRRRFFPGHCELKTCLVINERSMRSGSPVHDR 390

Query: 46  G 44
           G
Sbjct: 391 G 391


>SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 362 ETIVDIINSYHNACQNLK 415
           E I+DI+  +HNACQN K
Sbjct: 411 ENIIDILRKHHNACQNDK 428


>SB_46458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 508 RITHRTLKYNMLNIHEKMFQELKTIVCKHSAAKLYDILINYDINKEPLN 654
           R+T++   +N L  H++ F+++K ++ K      YD+     I  +  N
Sbjct: 169 RLTYKDAVFNWLPQHQETFEKIKMMITKAPLLHYYDVNKEVTIESDSSN 217


>SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)
          Length = 138

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 616 CRTVWRRCVCTQSFLILETFFRVCLACCISKCDV*C 509
           CR +  RCV  +    +  F   C+ACC+ +C   C
Sbjct: 6   CRVM--RCVGCRVMCCVACFVMHCVACCVMRCVACC 39


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 607  VWRRCVCTQSFLIL 566
            +W  CVCT+SFL+L
Sbjct: 1373 IWAACVCTKSFLLL 1386


>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 236 RPVYERFNLYKFEQTKNNSVSKPSRLGNVMFVNSLIDKPITRETIVDIINSYHNACQNLK 415
           R  Y RF  Y +   + +   +PSR+    F+  L +K      +V     YH  C+N+ 
Sbjct: 82  RSRYSRFVYYNYRHVRCSRSREPSRIPK-RFLRRLHNKSRKLRWVV-----YHRICRNIP 135

Query: 416 RSGH 427
           RS +
Sbjct: 136 RSSN 139


>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
          Length = 941

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +1

Query: 505 HRITHRTLKYNMLNIHEKMFQELKTIVCKHSAAKLYDILINYDI 636
           H+ T RT K  +  + + + + ++  +C  + AKLY++L +Y++
Sbjct: 91  HQHTRRTHKAGL--VVKTLRETMRAEMCTQAFAKLYEVLASYNV 132


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 658 NCSRALC*CRN*LICRTVWRRCVCTQSFLILETFFRVCLACCISKCDV*C 509
           +C   LC     ++CR V  R V  ++ L L    RV L   +S C V C
Sbjct: 375 SCCAVLCRA---VLCRAVSCRAVLCRAVLCLAVLCRVVLCRAVSCCTVWC 421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,475,706
Number of Sequences: 59808
Number of extensions: 441236
Number of successful extensions: 1118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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