Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120209.Seq
         (719 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   3.1  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   4.1  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   7.2  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 613 DILINYDINKEPLNNFRYNYEV 678
           DIL+  D+++ P NN R+ Y+V
Sbjct: 94  DILLLSDMHRPPENNGRWAYDV 115


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 526 LKYNMLNI-HEKMFQELKTIVCKHSAAKLYDILINYDINKEPLNNFRYNYE 675
           LK   +N+ H +  Q+L     +   A   D+L+  DI + P NN R+ Y+
Sbjct: 24  LKVMQINVDHCQAGQDLALQAAREHRA---DVLLLSDIYRPPANNGRWAYD 71


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +3

Query: 522 HFEIQHAKHTRKNVSRIKNDCVQTQRRQTV 611
           HF++    H  K   R+K D +  Q+   +
Sbjct: 232 HFQLFKLYHNEKEAKRLKEDQISKQQELNI 261


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 749,191
Number of Sequences: 2352
Number of extensions: 16468
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)