Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120209.Seq
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    30   1.4  
X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic int...    29   4.4  
U49831-2|AAK68314.1|  526|Caenorhabditis elegans Intermediate fi...    29   4.4  
U49831-1|AAA93405.1|  543|Caenorhabditis elegans Intermediate fi...    29   4.4  
AF067607-11|AAM81119.1|  412|Caenorhabditis elegans Innexin prot...    29   4.4  
AF067607-10|AAM81118.1|  436|Caenorhabditis elegans Innexin prot...    29   4.4  

>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 685 ITALRSCIENCSRALC*CRN*LICRTVWRRC--VCTQSFLILETFFRVCLACCISKCDV* 512
           + + R C   C    C C +     T   RC  +CTQ+ ++ +T   VC+  C+ KCD  
Sbjct: 39  VRSKRQCCAMCPSGNCGCGSCSGFVTCPDRCQPMCTQACVMAKT--SVCVDQCMPKCDSA 96

Query: 511 C 509
           C
Sbjct: 97  C 97


>X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic
           intermediate filamentprotein protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +3

Query: 3   HIENIQMNLQNKLKPRSITIEIVDKDKFENKHSDIEVCYVMNNRLHPQDVNSQQTLMCSS 182
           + E  Q+ LQ       +   IVD+ + + +  D+++      R+H Q++   +TL+  +
Sbjct: 171 YAEQDQLYLQLAAAKDELDAAIVDRRRLQAEEDDLKIELEFLGRIHSQEITELRTLLAQA 230


>U49831-2|AAK68314.1|  526|Caenorhabditis elegans Intermediate
           filament, b protein2, isoform c protein.
          Length = 526

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +3

Query: 3   HIENIQMNLQNKLKPRSITIEIVDKDKFENKHSDIEVCYVMNNRLHPQDVNSQQTLMCSS 182
           + E  Q+ LQ       +   IVD+ + + +  D+++      R+H Q++   +TL+  +
Sbjct: 171 YAEQDQLYLQLAAAKDELDAAIVDRRRLQAEEDDLKIELEFLGRIHSQEITELRTLLAQA 230


>U49831-1|AAA93405.1|  543|Caenorhabditis elegans Intermediate
           filament, b protein2, isoform a protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +3

Query: 3   HIENIQMNLQNKLKPRSITIEIVDKDKFENKHSDIEVCYVMNNRLHPQDVNSQQTLMCSS 182
           + E  Q+ LQ       +   IVD+ + + +  D+++      R+H Q++   +TL+  +
Sbjct: 171 YAEQDQLYLQLAAAKDELDAAIVDRRRLQAEEDDLKIELEFLGRIHSQEITELRTLLAQA 230


>AF067607-11|AAM81119.1|  412|Caenorhabditis elegans Innexin protein
           18, isoform b protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 340 NRQTDNKRNYSGYYQFVP*RLSKSKKIW--PQSCWRLQSV*TGL 465
           +R  D +R   GYYQ+VP  L+ +   +  P S WR+ +  +GL
Sbjct: 93  HRLDDRERRQIGYYQWVPFVLAVAALTFHIPSSVWRMLAGQSGL 136


>AF067607-10|AAM81118.1|  436|Caenorhabditis elegans Innexin protein
           18, isoform a protein.
          Length = 436

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 340 NRQTDNKRNYSGYYQFVP*RLSKSKKIW--PQSCWRLQSV*TGL 465
           +R  D +R   GYYQ+VP  L+ +   +  P S WR+ +  +GL
Sbjct: 93  HRLDDRERRQIGYYQWVPFVLAVAALTFHIPSSVWRMLAGQSGL 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,610
Number of Sequences: 27780
Number of extensions: 343193
Number of successful extensions: 906
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)