Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120209.Seq
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25320.1 68414.m03142 leucine-rich repeat transmembrane prote...    29   3.1  
At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein / b...    29   4.1  
At5g43840.1 68418.m05360 heat shock transcription factor family ...    28   5.4  
At4g21400.1 68417.m03091 protein kinase family protein contains ...    27   9.5  
At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative (CH...    27   9.5  

>At1g25320.1 68414.m03142 leucine-rich repeat transmembrane protein
           kinase, putative similar to putative receptor-like
           protein kinase GI:4262228 from [Arabidopsis thaliana]
          Length = 702

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -1

Query: 107 NVGMLVFKFVLVYNFNGD 54
           +VG L+F F+L++NFNG+
Sbjct: 2   SVGSLLFMFLLIWNFNGE 19


>At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein /
           beta-glucosidase, putative (BG1) contains Pfam PF00232 :
           Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; identical to GI:6651430
           from [Arabidopsis thaliana]
          Length = 528

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 253 TLIDWSSGSVSLYKQNGKAFNSTNDEHIK 167
           +L+DW S SV  YK   K FN   D + K
Sbjct: 372 SLVDWDSKSVDGYKIGSKPFNGKLDVYSK 400


>At5g43840.1 68418.m05360 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 282

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 522 HFEIQHAKHTRKNVSRIKNDCVQTQRRQTVRHINQLRH*QRALEQFSIQLR 674
           HF ++  +H  KN+ R K    QTQ +     I++LR  + ALE   ++LR
Sbjct: 94  HF-LKGERHLLKNIKRRKTSS-QTQTQSLEGEIHELRRDRMALEVELVRLR 142


>At4g21400.1 68417.m03091 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 711

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 484 FYYFDARHRITHRTLKYNMLNIHEKMFQELKTIVCKHSAAKLYD 615
           + + D+R+RI HR LK +  NI   + QE+   +     AKLYD
Sbjct: 501 YLHEDSRYRIIHRDLKAS--NI--LLDQEMNPKIADFGLAKLYD 540


>At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative
           (CHX21)  and similar to hypothetical proteins;
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 232

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 239 PVYERF-NLYKFEQTK--NNSVSKPSRLGNVMFVNSLIDKPITRETIVDIINSYHNACQN 409
           P++ R  NL  FE  K  ++S S P R G    V    +K +T E IVD   S +  C  
Sbjct: 46  PLFPRNPNLKNFEMGKRGSSSGSVPIR-GFTKLVTESRNKGLTVEEIVDDHRSNNRECVR 104

Query: 410 LKR 418
           LKR
Sbjct: 105 LKR 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585,198
Number of Sequences: 28952
Number of extensions: 290822
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)