Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120207X.Seq
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632...    32   0.31 
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    29   2.9  
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629...    27   6.6  
05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216     27   6.6  
05_03_0553 - 15389376-15389499,15391167-15391576                       27   8.8  
05_03_0544 + 15239186-15239589,15242963-15243188                       27   8.8  

>07_03_1576 -
           27862043-27862129,27862935-27862988,27863042-27863243,
           27865015-27865249,27865338-27865404,27865489-27865639,
           27866898-27866957,27867402-27867466
          Length = 306

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +1

Query: 340 LDTCKHQLCSMCXXXXXXXXXXPCPLCR-----VESLHFNVYSINRNVVDV 477
           L TC H +C  C           CP CR     V S    +Y+ NR++VD+
Sbjct: 178 LPTCSHAMCIKCYRDWRSRSQS-CPFCRDSLKRVNSADLWIYTDNRDIVDI 227


>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 265 CFSVAEIKNYFMQPIDRLTIIPVLELDTCK 354
           CFS     N++M+PI+ LT++  +++DT +
Sbjct: 237 CFSTEGTANFYMRPIEGLTVL--VDMDTAE 264


>11_06_0180 +
           20962420-20962528,20962618-20962699,20962831-20962948,
           20963024-20963062,20963181-20963343,20963706-20963921,
           20964039-20964116,20964244-20964500,20964544-20964575,
           20964815-20965197,20965262-20965831,20966250-20966343,
           20966365-20966541,20966761-20966963,20968244-20968301,
           20969126-20969381,20969553-20969789
          Length = 1023

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +1

Query: 253 ACNICFSVAEIKNYFMQPIDRLTIIPVLELDT-CKHQLCSMCXXXXXXXXXXPCPLCR 423
           +C+  F  A++   +     RL+II    + T C H+ C  C           CP CR
Sbjct: 18  SCSTYFREAQLDRVYYA---RLSIIQKARIITECLHRFCRDCIEKSMRLGNDECPACR 72


>05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216
          Length = 137

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 4   EGDTRELDRTLSGYEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 144
           E D+ + D     Y +Y    PL L  Q+ +  N F+   + + A+P
Sbjct: 9   ECDSAQFDVLGQSYRQYQLQSPLLLQQQVFSPYNEFVIQQYGTAASP 55


>05_03_0553 - 15389376-15389499,15391167-15391576
          Length = 177

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 43  YEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 144
           Y +Y    PL L  Q+++  N F+R  +   A+P
Sbjct: 28  YRQYQLQSPLLLQQQVLSPYNEFVRQQYGITASP 61


>05_03_0544 + 15239186-15239589,15242963-15243188
          Length = 209

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 19  ELDRTLSGYEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 144
           + D     Y +Y    P+ L  Q+++  N F+R  +   A+P
Sbjct: 20  QFDVLCQSYRQYQLQSPVLLQQQVLSPYNEFVRQQYGIAASP 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,703,571
Number of Sequences: 37544
Number of extensions: 224560
Number of successful extensions: 652
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)