Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120207X.Seq
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)              31   0.55 
SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)                   29   1.7  
SB_28707| Best HMM Match : rve (HMM E-Value=0.011)                     28   3.9  
SB_24234| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07)                 27   9.0  

>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +2

Query: 56  RRTFRC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 217
           RR   C FW     + K L      C+T    +Q  TL+   A A W+++ +VLFS N +
Sbjct: 524 RRARECIFWPGMPAEIKQLASVCDACQTFAKAQQKETLIAIEAKAPWEIVGVVLFSWNNK 583


>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
          Length = 337

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 349 CKHQLCSMCXXXXXXXXXXPCPLCRV 426
           C+H+ C MC           CP+CR+
Sbjct: 52  CEHEFCKMCFTQNVQEANLQCPMCRI 77


>SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 256 CNICFSVAEIK-NYFMQPIDRLTIIPVLELDTCKHQLC 366
           C   ++   +K   F QP  RL+ IPV+E   C H +C
Sbjct: 33  CQFVYASVLLKFTNFTQPCPRLSGIPVVEASVCHHIIC 70


>SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)
          Length = 637

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +2

Query: 56  RRTFRC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 217
           RR   C FW     + K L      C+T    +Q +TL+   A A W+++ + LFS N +
Sbjct: 450 RRARECIFWPGMSAEIKQLASVCDACQTFAKAQQKKTLITIEAKAPWEIVGVDLFSWNNK 509


>SB_28707| Best HMM Match : rve (HMM E-Value=0.011)
          Length = 173

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +2

Query: 56  RRTFRC-FW-----DTK*LIQKTTFCETTLYQEQIRTLLWAAASAHWQVLRLVLFSANRR 217
           RR   C FW     + K L      C+T    +Q  TL+   A A W+++ + LFS N +
Sbjct: 30  RRARECIFWPGMSAEIKQLASVCDACQTFSKAQQKETLITKEAKAPWEIVGVDLFSWNNK 89


>SB_24234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 285 NFCNRKTNVACNLTNSIFRRLHLRLFAENNTRRRT 181
           N  NR+TN+A   TN   ++ +L +   N T R+T
Sbjct: 67  NLTNRQTNLAIRQTNLTIKQTNLTIRQTNLTIRQT 101


>SB_2351| Best HMM Match : zf-C3HC4 (HMM E-Value=4e-07)
          Length = 137

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
 Frame = +1

Query: 286 KNYFMQPI--DRLTIIPVLE--------LDTCKHQLCSMCXXXXXXXXXXPCPLC 420
           KNYF +P   +R  + PV E        +  C H+LC  C           CP C
Sbjct: 40  KNYFKKPPFEERKHLCPVCEDIFVSPVQIKECGHRLCQHCYKTIWRSPEPKCPKC 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,169,015
Number of Sequences: 59808
Number of extensions: 269227
Number of successful extensions: 635
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)