Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120207X.Seq
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    33   0.12 
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    30   1.1  
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear recep...    28   3.4  
AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear horm...    28   3.4  
AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear horm...    28   3.4  
AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.     27   6.0  
AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical...    27   7.9  

>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +1

Query: 262 ICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESLHF 441
           +CF   ++     +P D   ++PV  L  C H +C +C           CP+C       
Sbjct: 10  LCFQCGKLYESITKPDDEAILVPV--LGACLHSICILC--ATGLESPNSCPICENPEAFG 65

Query: 442 NVYS 453
           N+ S
Sbjct: 66  NIIS 69


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 241 VCQIACNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLC 420
           V ++  N+ F   E ++       ++   PV  L TCKH +C+ C           CP+C
Sbjct: 7   VVEMLSNLDFESLEFEDVQCHICFQVNHEPVTFL-TCKHSICAGCAGRWLSSCSV-CPMC 64

Query: 421 --RVESLHFN 444
             RV  +H N
Sbjct: 65  RTRVREIHLN 74


>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +1

Query: 304 PIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRNVVDV 477
           PI +  +I    +  C H+ C +C           CP+CR   +  N+++    V+D+
Sbjct: 13  PICQCKMIVPTTIPACGHKFCFICLKGVYMNDMGGCPMCR-GPIDSNIFAQPSQVLDL 69


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +1

Query: 349 CKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRNVVDVI 480
           C H  C  C           CP C   S   N +S N+ +++V+
Sbjct: 158 CGHTYCESCIQVCKHQFQIKCPFCTTTSYQIN-FSTNKLILEVL 200


>AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical
           protein B0281.8 protein.
          Length = 292

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +1

Query: 349 CKHQLCSMCXXXXXXXXXXPCPLCR--VESLHFNVYSINRN--VVDVIK 483
           C H LC  C           CP CR   E   +N+ S+++N  ++ +IK
Sbjct: 28  CSHTLCEGCIKKLLKNGRVVCPFCREPTEVPVYNIKSLHKNFSLIQMIK 76


>AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical
           protein B0281.3 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 349 CKHQLCSMCXXXXXXXXXXPCPLCR--VESLHFNVYSINRN--VVDVIKCSVTSVAQ 507
           C H LC  C           CP CR   E    N+ S+++N  ++ VIK ++   A+
Sbjct: 57  CCHTLCEGCIKKLLNYSRIVCPFCREPTEVPGNNIKSLHKNFSLIQVIKTTLVEEAE 113


>AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical
           protein F42G2.5 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 349 CKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRN 465
           C H +C  C           CP CR E+   +V S+ +N
Sbjct: 155 CGHSICQSCASKLAKNCVILCPFCRNETNVSSVASLPKN 193


>AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear receptor
           NHR-8 protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 330 WYYSQSVYWLHKIIFNFCNRKTNVACNLTNSIFRRLHL 217
           W+  +S+  + +II     R  N+AC L  S+FR LH+
Sbjct: 358 WHNPKSIDGVFRIIEEALRRIVNMACQL--SLFRELHV 393


>AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform b protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 330 WYYSQSVYWLHKIIFNFCNRKTNVACNLTNSIFRRLHL 217
           W+  +S+  + +II     R  N+AC L  S+FR LH+
Sbjct: 357 WHNPKSIDGVFRIIEEALRRIVNMACQL--SLFRELHV 392


>AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform a protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 330 WYYSQSVYWLHKIIFNFCNRKTNVACNLTNSIFRRLHL 217
           W+  +S+  + +II     R  N+AC L  S+FR LH+
Sbjct: 358 WHNPKSIDGVFRIIEEALRRIVNMACQL--SLFRELHV 393


>AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical
           protein F43C11.8 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +1

Query: 244 CQIACNICFSVAEIKNYFMQPIDRLTIIPVLELDT----CKHQLCSMCXXXXXXXXXXPC 411
           C+I CN  FS A  +N   + + +L ++P L+L      C H +C  C           C
Sbjct: 6   CEI-CNEDFSSATDEN-IPRILSKL-LLPFLKLKNKNSGCGHTICHGCAEKLLQNSMILC 62

Query: 412 PLCRVESLHFNVYSINRN 465
           P CR  +    V  + +N
Sbjct: 63  PFCREATNVSTVKDLQKN 80


>Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical
           protein T15D6.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 63  RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 155
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 338 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 371


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 346 TCKHQLCSMCXXXXXXXXXXPCPLCR 423
           TC H LC  C           CP CR
Sbjct: 26  TCGHALCHKCITAMVNNSTVECPFCR 51


>AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 63  RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 155
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 230 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 263


>AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical
           protein Y105E8A.14 protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 322 IIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCR 423
           I+P   + +C H+ C +C           CP+CR
Sbjct: 32  ILPTT-IPSCGHKFCFICLKGVSVSNNGDCPICR 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,358
Number of Sequences: 27780
Number of extensions: 212654
Number of successful extensions: 573
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)