Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120207X.Seq
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12270.1 68417.m01944 copper amine oxidase family protein con...    30   1.0  
At4g12290.1 68417.m01947 copper amine oxidase, putative similar ...    28   4.2  
At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger) fa...    28   4.2  
At5g35080.1 68418.m04151 expressed protein                             27   7.3  
At1g49360.1 68414.m05533 F-box family protein contains Pfam PF00...    27   9.7  

>At4g12270.1 68417.m01944 copper amine oxidase family protein
           contains similarity to copper amine oxidase [Cicer
           arietinum] gi|3819099|emb|CAA08855; contains Pfam
           domains PF02728: Copper amine oxidase, N3 domain and
           PF02727: Copper amine oxidase, N2 domain
          Length = 460

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 265 CFSVAEIKNYFMQPIDRLTIIPVLELDT 348
           CFS  +  N++M+PI+ LT++   +LDT
Sbjct: 236 CFSTQDTPNFYMRPIEGLTLL--FDLDT 261


>At4g12290.1 68417.m01947 copper amine oxidase, putative similar to
           copper amine oxidase [Cicer arietinum]
           gi|3819099|emb|CAA08855
          Length = 566

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 265 CFSVAEIKNYFMQPIDRLTIIPVLELDT 348
           CF      N++M+PI+ LTI+  ++LDT
Sbjct: 58  CFMTQGTPNFYMRPIEGLTIL--IDLDT 83


>At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHA2b [Arabidopsis thaliana] GI:3790571; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 211

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +1

Query: 337 ELDTCKHQLCSMCXXXXXXXXXXPCPLCR--VESLH 438
           E+ TC H     C           CPLCR  V+ LH
Sbjct: 175 EMPTCSHYFHEPCLTEWLTRDNNSCPLCRKPVDKLH 210


>At5g35080.1 68418.m04151 expressed protein
          Length = 282

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 256 CNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMC 375
           C++  S  E++  F+    R  +  + EL TCK+ L   C
Sbjct: 194 CDLTGSPREVEVRFVCAETRAMVTSITELSTCKYALTVQC 233


>At1g49360.1 68414.m05533 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 481

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 474 VHNVSVYAVNVEMQTFNPAQGTWYFFSFPNL 382
           ++N+S  +V +++ T+ P   TW    FPNL
Sbjct: 254 INNISS-SVAIKISTWRPGATTWLHEDFPNL 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,275,629
Number of Sequences: 28952
Number of extensions: 183582
Number of successful extensions: 414
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)