Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120206.Seq
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine re...    27   7.5  
AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine re...    27   7.5  
U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deamin...    27   9.9  

>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 354 ERLRFRQFPLSR-LTREKTQCTLRLIVYYLCFKTAN*LLCLCTFKICLNSIFFPRYIIE 181
           E L  RQ PL   LT  K Q  L+    Y   K A   + + +FKI    I+FP  +I+
Sbjct: 713 ENLFMRQGPLFLPLTLLKKQPMLKPFGPYPYIKDARDPILIMSFKIWDTEIYFPNVVID 771


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 354 ERLRFRQFPLSR-LTREKTQCTLRLIVYYLCFKTAN*LLCLCTFKICLNSIFFPRYIIE 181
           E L  RQ PL   LT  K Q  L+    Y   K A   + + +FKI    I+FP  +I+
Sbjct: 713 ENLFMRQGPLFLPLTLLKKQPMLKPFGPYPYIKDARDPILIMSFKIWDTEIYFPNVVID 771


>AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 60 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -1

Query: 354 ERLRFRQFPLSRLTREKTQCTLRLIVYYLCFKTAN*LLCLCTFKICLNSIFFPRYIIEHG 175
           ++LR    P  R++++ T    RL + Y CF     L+      I  N  F P +I+ H 
Sbjct: 213 KKLRAANLPTDRISKKLT----RLALIY-CFLYTGILMWSVITSIDSNFPFLPAFIVNHN 267

Query: 174 HVFI 163
             F+
Sbjct: 268 FTFL 271


>AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 50 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 155 CWIINTWPCSIMYRGKNIEF 214
           CWI NTWP  +++R   +EF
Sbjct: 50  CWI-NTWPNRMVFREDGLEF 68


>U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deaminase
           protein 1 protein.
          Length = 158

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 420 LFETNTYSYYFYPFLTRSLEEHER 349
           + ET TY    Y F  +SL++HE+
Sbjct: 120 IIETTTYELLPYAFTPKSLDDHEK 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,073,841
Number of Sequences: 27780
Number of extensions: 204623
Number of successful extensions: 354
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)