Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120206.Seq
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52290.1 68418.m06489 hypothetical protein                          27   7.0  
At2g05290.1 68415.m00557 expressed protein similar to zinc finge...    27   9.3  

>At5g52290.1 68418.m06489 hypothetical protein
          Length = 1569

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 282 LILKCTEFFHVLSDLAETAGILIVHALLTIALKRDRNSNC 401
           L+ KCTE F+ +S+L E A +   H LL    ++    +C
Sbjct: 440 LVEKCTEPFYGISNLDEHAPVNTSHGLLENPFQKTGARDC 479


>At2g05290.1 68415.m00557 expressed protein similar to zinc finger
           protein [Arabidopsis thaliana] GI:976277
          Length = 383

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 360 EHERLRFRQFPLSRLTREKTQC 295
           ++ER+R R F   RLT EK +C
Sbjct: 198 DYERIRKRCFQCQRLTHEKPRC 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,873,313
Number of Sequences: 28952
Number of extensions: 170721
Number of successful extensions: 343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)