Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120205.Seq
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.96 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    28   1.7  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   3.9  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   6.8  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   9.0  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 42  CHIWFDTPAPFFSRYHTQTQ 101
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 138 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 224
           ++QK  +P  DK P   N L+L A   TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = -1

Query: 370 KVIYLQNSNKNKLFELSGL-----SLKSCRHD--FVTVESQTRAGEKSLRSFATVGCVEC 212
           +V+YL ++NK + FELS +        + +H   F+  +  T   E+    F  +    C
Sbjct: 379 RVLYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSC 438

Query: 211 LAVNSSVFCNF 179
           L +   +F N+
Sbjct: 439 LQLMMDIFGNY 449


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 512  LGGFMSNS-LQFRVFT*FLVLNRLLCNSWHGQQQSTPSVRSINSYNSVYSLKSFIVLLNS 688
            L GF  N+ +   V T   +L+ ++   W G  ++ PSV S++   +VY+L      ++S
Sbjct: 966  LSGFEDNNQISLYVITGVFILSTIV---WWGLYRNLPSVHSLSLPFAVYALAFLFTGISS 1022

Query: 689  FA 694
             +
Sbjct: 1023 MS 1024


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 365 NFIIQYLSVFD--FLFARTPSVGMLFLFF 445
           +FI ++ S+     LFA T SVG LF+FF
Sbjct: 226 SFINRHPSILKDMLLFACTGSVGQLFIFF 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,994
Number of Sequences: 5004
Number of extensions: 61411
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)